Browse Element(s) Details


OsAffx.16792.1.S1_at

Description tigr:9636.m00150
TID=OsAffx.16792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF528064 ACR8
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0250011/11ACT domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02470NANA8+988034..993870retrotransposon protein, putative, unclassified
LOC_Os08g02480NANA8+995411..997901retrotransposon protein, putative, unclassified
LOC_Os08g02490Os.8367.1.S1_at11/118+1001077..1004672AT hook motif family protein, expressed
LOC_Os08g02500OsAffx.16792.1.S1_at11/118+1008469..1010649ACT domain-containing protein, putative
LOC_Os08g02500Os.5392.1.S1_at1/118+1008469..1010649ACT domain-containing protein, putative
LOC_Os08g02500OsAffx.25598.1.S1_x_at1/118+1008469..1010649ACT domain-containing protein, putative
LOC_Os08g02509NANA8+1032297..1032515NA
LOC_Os08g02520OsAffx.28989.1.S1_s_at11/118+1033244..1033831Auxin-induced protein 10A5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006521biological_processregulation of amino acid metabolism
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16792.1.S1_at--845--5751Chr08:1009558..1009582 (25 bp)
GACGGGAGCCCCATCAGCTCCGAGG
LOC_Os08g02500
OsAffx.16792.1.S1_at--678--4511Chr08:1009534..1009558 (25 bp)
GCCGAGCGCCACAGAGTGAGCCAAT
LOC_Os08g02500
OsAffx.16792.1.S1_at--408--1331Chr08:1009522..1009546 (25 bp)
AGAGTGAGCCAATGCCTCCAGGACG
LOC_Os08g02500
OsAffx.16792.1.S1_at--244--8111Chr08:1009502..1009526 (25 bp)
GGACGCCATTGAACGGAGATCACTA
LOC_Os08g02500
OsAffx.16792.1.S1_at--379--6671Chr08:1009334..1009358 (25 bp)
GTTGCTGTCGGATGTCACCCGGACA
LOC_Os08g02500
OsAffx.16792.1.S1_at--486--8731Chr08:1009322..1009346 (25 bp)
TGTCACCCGGACATTCAGGGAGAAC
LOC_Os08g02500
OsAffx.16792.1.S1_at--77--2991Chr08:1009246..1009270 (25 bp)
AATGTGTTCTATGTCACCGACGCCG
LOC_Os08g02500
OsAffx.16792.1.S1_at--805--4991Chr08:1009170..1009194 (25 bp)
GCATGGACTGTCTCGTTGCCAGGGA
LOC_Os08g02500
OsAffx.16792.1.S1_at--971--8711Chr08:1009162..1009186 (25 bp)
TGTCTCGTTGCCAGGGAGGAGCACC
LOC_Os08g02500
OsAffx.16792.1.S1_at--269--1591Chr08:1009131..1009155 (25 bp)
AGCTCTACCAGAAAGCTGGGCCGCG
LOC_Os08g02500
OsAffx.16792.1.S1_at--755--4691Chr08:1009077..1009101 (25 bp)
GCGGCATTGGGCTGTTCTACCTTGG
LOC_Os08g02500
Target Sequence 
GACGGGAGCCCCATCAGCTCCGAGGCCGAGCGCCACAGAGTGAGCCAATGCCTCCAGGACGCCATTGAACGGAGATCACT
AGAGGGAGTGAGACTGGAGCTGTGCACGCCGGACCGGCCGGCGTTGCTGTCGGATGTCACCCGGACATTCAGGGAGAACG
GGTTGCTGGTGGCGCAGGCGGAGGTGTCCACCAAGGGCGACATGGCCTCCAATGTGTTCTATGTCACCGACGCCGCTGGC
CACGCCGTCGAGCAGAGCGCCATTGATGCCGTGAGGCAGAGGGTTGGCATGGACTGTCTCGTTGCCAGGGAGGAGCACCG
GCCGCAGCTCTACCAGAAAGCTGGGCCGCGCGACGCCGTCGATGGCAATGGCGGCGGCGGCGGCATTGGGCTGTTCTACC
TTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis