Browse Element(s) Details


OsAffx.28989.1.S1_s_at

Description tigr:9636.m00152
TID=OsAffx.28989.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to auxin-induced SAUR-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0252011/11Auxin-induced protein 10A5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02500OsAffx.16792.1.S1_at11/118+1008469..1010649ACT domain-containing protein, putative
LOC_Os08g02500Os.5392.1.S1_at1/118+1008469..1010649ACT domain-containing protein, putative
LOC_Os08g02500OsAffx.25598.1.S1_x_at1/118+1008469..1010649ACT domain-containing protein, putative
LOC_Os08g02509NANA8+1032297..1032515NA
LOC_Os08g02520OsAffx.28989.1.S1_s_at11/118+1033244..1033831Auxin-induced protein 10A5, putative, expressed
LOC_Os08g02530NANA8+1039364..1039672Auxin responsive protein
LOC_Os08g02540Os.56279.1.S1_at11/118+1040592..1043634Adenylate kinase family protein, expressed
LOC_Os08g02550Os.33735.1.S1_at11/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_x_at10/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_at4/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02560OsAffx.16793.1.S1_at11/118+1050028..1053386hypothetical protein
LOC_Os08g02570OsAffx.28991.1.S1_at11/118+1055977..1059449hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010200biological_processresponse to chitin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28989.1.S1_s_at--694--10451Chr08:1033495..1033519 (25 bp)
TTACCTGAAGCACCCGTCGTTCGTG
LOC_Os08g02520
OsAffx.28989.1.S1_s_at--751--1691Chr08:1033653..1033677 (25 bp)
ACCACTAGCTCGCTGTTAATTAGTT
LOC_Os08g02520
OsAffx.28989.1.S1_s_at--464--2971Chr08:1033678..1033702 (25 bp)
AATTAGTAGCTTCTAGTTAATTAGC
LOC_Os08g02520
OsAffx.28989.1.S1_s_at--560--3111Chr08:1033696..1033720 (25 bp)
AATTAGCTAGCTATGACGGCTCGGA
LOC_Os08g02520
OsAffx.28989.1.S1_s_at--963--671Chr08:1033708..1033732 (25 bp)
ATGACGGCTCGGATTTTTGTGTTCT
LOC_Os08g02520
OsAffx.28989.1.S1_s_at--589--3931Chr08:1033712..1033736 (25 bp)
CGGCTCGGATTTTTGTGTTCTCTTT
LOC_Os08g02520
OsAffx.28989.1.S1_s_at--874--8791Chr08:1033727..1033751 (25 bp)
TGTTCTCTTTTCTTGTTGCTGAGGA
LOC_Os08g02520
OsAffx.28989.1.S1_s_at--1086--6551Chr08:1033750..1033774 (25 bp)
GATTAATTGGAATCCTTCTTGCTGA
LOC_Os08g02520
OsAffx.28989.1.S1_s_at--127--31Chr08:1033755..1033779 (25 bp)
ATTGGAATCCTTCTTGCTGATGAGA
LOC_Os08g02520
OsAffx.28989.1.S1_s_at--627--3631Chr08:1033767..1033791 (25 bp)
CTTGCTGATGAGATCGTTCGTTGTA
LOC_Os08g02520
OsAffx.28989.1.S1_s_at--971--6031Chr08:1033776..1033800 (25 bp)
GAGATCGTTCGTTGTACTACTTGTA
LOC_Os08g02520
Target Sequence 
TTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTGGAGGAGGAATTCGGCTTCGACTGCCACCGCTGCGGTG
GCCTCACCATCCCCTGCGCCACCGAGGGCGACTTCGCCTCCTTCGTCGCCGAAGCCATCGCCTCCGACGACCACCACCAC
CACTAGCTCGCTGTTAATTAGTTAATTAGTAGCTTCTAGTTAATTAGCTAGCTATGACGGCTCGGATTTTTGTGTTCTCT
TTTCTTGTTGCTGAGGATTAATTGGAATCCTTCTTGCTGATGAGATCGTTCGTTGTACTACTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28989.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis