Browse Element(s) Details


Os.56279.1.S1_at

Description gb:AK109749.1
DB_XREF= gi:32994958
TID=Os.56279.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-F06, full insert sequence.
FL= gb:AK109749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0254011/11Adenylate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02509NANA8+1032297..1032515NA
LOC_Os08g02520OsAffx.28989.1.S1_s_at11/118+1033244..1033831Auxin-induced protein 10A5, putative, expressed
LOC_Os08g02530NANA8+1039364..1039672Auxin responsive protein
LOC_Os08g02540Os.56279.1.S1_at11/118+1040592..1043634Adenylate kinase family protein, expressed
LOC_Os08g02550Os.33735.1.S1_at11/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_x_at10/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_at4/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02560OsAffx.16793.1.S1_at11/118+1050028..1053386hypothetical protein
LOC_Os08g02570OsAffx.28991.1.S1_at11/118+1055977..1059449hypothetical protein
LOC_Os08g02580OsAffx.28992.1.S1_at10/118+1062365..1065127hypothetical protein
LOC_Os08g02590OsAffx.28993.1.S1_at11/118+1067826..1068158expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004017molecular_functionadenylate kinase activity
GO:0019201molecular_functionnucleotide kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56279.1.S1_at--1133--5191Chr08:1043271..1043295 (25 bp)
GAATTGAAGACATCAGCTCGCCCTG
LOC_Os08g02540
Os.56279.1.S1_at--187--1431Chr08:1043297..1043321 (25 bp)
AGAAACATGGCAGGGACTTGTCGCT
LOC_Os08g02540
Os.56279.1.S1_at--441--5811Chr08:1043354..1043378 (25 bp)
GACGCCGCACAAACTCACTATGTAA
LOC_Os08g02540
Os.56279.1.S1_at--827--251Chr08:1043379..1043403 (25 bp)
ATATCGTTTGTGTGTTGTCTGAGAA
LOC_Os08g02540
Os.56279.1.S1_at--725--1251Chr08:1043432..1043456 (25 bp)
AGATTGTGATCCTAGCCTGCAACAT
LOC_Os08g02540
Os.56279.1.S1_at--150--6951Chr08:1043459..1043483 (25 bp)
GTAGTATTCCTATCCTATGTTTGTG
LOC_Os08g02540
Os.56279.1.S1_at--326--751Chr08:1043475..1043499 (25 bp)
ATGTTTGTGGATTCTGACTTCTGAG
LOC_Os08g02540
Os.56279.1.S1_at--224--3591Chr08:1043515..1043539 (25 bp)
CATTTTTGTCTCTCTGTTTTCATAG
LOC_Os08g02540
Os.56279.1.S1_at--446--10711Chr08:1043558..1043582 (25 bp)
TTGCGGACGCACTTATATGTTTGTA
LOC_Os08g02540
Os.56279.1.S1_at--597--2731Chr08:1043586..1043610 (25 bp)
AAGAATACTGGACTTGCGAGTGCAA
LOC_Os08g02540
Os.56279.1.S1_at--166--2831Chr08:1043609..1043633 (25 bp)
AAGTATACCAGCTTGTTTTCCTCCT
LOC_Os08g02540
Target Sequence 
GAATTGAAGACATCAGCTCGCCCTGGAGAAACATGGCAGGGACTTGTCGCTGCCCTACATCTCCAGCATCTGGATGCATC
CCCGACGCCGCACAAACTCACTATGTAAATATCGTTTGTGTGTTGTCTGAGAAAGATCAAAGAACTTGAGTCTAAGGATC
TAGATTGTGATCCTAGCCTGCAACATATGTAGTATTCCTATCCTATGTTTGTGGATTCTGACTTCTGAGGAGTCAGCCGG
CTGTCATTTTTGTCTCTCTGTTTTCATAGATATAAATGTAAGCGATTTTGCGGACGCACTTATATGTTTGTAATGAAGAA
TACTGGACTTGCGAGTGCAAGTATACCAGCTTGTTTTCCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis