Browse Element(s) Details


Os.33735.1.S1_at

Description gb:AK058565.1
DB_XREF= gi:32968583
TID=Os.33735.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023126C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E02, full insert sequence.
FL= gb:AK058565.1 gb:AK099289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0255011/11COP9 signalosome complex subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02509NANA8+1032297..1032515NA
LOC_Os08g02520OsAffx.28989.1.S1_s_at11/118+1033244..1033831Auxin-induced protein 10A5, putative, expressed
LOC_Os08g02530NANA8+1039364..1039672Auxin responsive protein
LOC_Os08g02540Os.56279.1.S1_at11/118+1040592..1043634Adenylate kinase family protein, expressed
LOC_Os08g02550Os.33735.1.S1_at11/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_x_at10/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_at4/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02560OsAffx.16793.1.S1_at11/118+1050028..1053386hypothetical protein
LOC_Os08g02570OsAffx.28991.1.S1_at11/118+1055977..1059449hypothetical protein
LOC_Os08g02580OsAffx.28992.1.S1_at10/118+1062365..1065127hypothetical protein
LOC_Os08g02590OsAffx.28993.1.S1_at11/118+1067826..1068158expressed protein
LOC_Os08g02600OsAffx.5684.1.S1_at11/118+1068948..1069730expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0008180cellular_componentsignalosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33735.1.S1_at--1118--3271Chr08:1048361..1048385 (25 bp)
CACAAATATTTTTGAGACGACCTCT
LOC_Os08g02550
Os.33735.1.S1_at--587--7851Chr08:1048533..1048557 (25 bp)
GGTAGTTTATTCAATCAGCTATCCT
LOC_Os08g02550
Os.33735.1.S1_at--779--131Chr08:1048541..1048565 (25 bp)
ATTCAATCAGCTATCCTCTTGGATG
LOC_Os08g02550
Os.33735.1.S1_at--105--651Chr08:1048563..1048587 (25 bp)
ATGCATTTTGCTGCAATTCATCCAT
LOC_Os08g02550
Os.33735.1.S1_at--1050--4751Chr08:1048572..1048596 (25 bp)
GCTGCAATTCATCCATTTTTCTGTG
LOC_Os08g02550
Os.33735.1.S1_at--955--7051Chr08:1048634..1048658 (25 bp)
GTAAGGTTTGGCCATTGCAGCGAAC
LOC_Os08g02550
Os.33735.1.S1_at--720--10871Chr08:1048641..1048665 (25 bp)
TTGGCCATTGCAGCGAACTTCATAT
LOC_Os08g02550
Os.33735.1.S1_at--280--5071Chr08:1048650..1048674 (25 bp)
GCAGCGAACTTCATATAAGGCCGAA
LOC_Os08g02550
Os.33735.1.S1_at--35--2951Chr08:1048666..1048690 (25 bp)
AAGGCCGAAGCTAACACTAATAATG
LOC_Os08g02550
Os.33735.1.S1_at--1097--10491Chr08:1048703..1048727 (25 bp)
TTAATTCACGTTTGCATGATGCCTC
LOC_Os08g02550
Os.33735.1.S1_at--197--4991Chr08:1048716..1048740 (25 bp)
GCATGATGCCTCAGGAAGGTTATGA
LOC_Os08g02550
Target Sequence 
CACAAATATTTTTGAGACGACCTCTGCATTATGTGACTCGAGGTAGTACATTAGTCAAACTAGTTGTTCTCATGATTGCC
AGTTTGATCCGTACATTCCGCCCATCAAAATTTAAACCCTGTAAATTCTGGCGTTAAAGAATGGTGCTTTTGAACCAGAG
ACTGAATCAGTTGGTAGTTTATTCAATCAGCTATCCTCTTGGATGCATTTTGCTGCAATTCATCCATTTTTCTGTGGAGT
TCTTTTCCTNTTTGTTGTTGCTGTTCACGTGGGGTAAGGTTTGGCCATTGCAGCGAACTTCATATAAGGCCGAAGCTAAC
ACTAATAATGATGACGTGGAANTTAATTCACGTTTGCATGATGCCTCAGGAAGGTTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis