Browse Element(s) Details


OsAffx.28991.1.S1_at

Description tigr:9636.m00156
TID=OsAffx.28991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0257011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02509NANA8+1032297..1032515NA
LOC_Os08g02520OsAffx.28989.1.S1_s_at11/118+1033244..1033831Auxin-induced protein 10A5, putative, expressed
LOC_Os08g02530NANA8+1039364..1039672Auxin responsive protein
LOC_Os08g02540Os.56279.1.S1_at11/118+1040592..1043634Adenylate kinase family protein, expressed
LOC_Os08g02550Os.33735.1.S1_at11/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_x_at10/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_at4/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02560OsAffx.16793.1.S1_at11/118+1050028..1053386hypothetical protein
LOC_Os08g02570OsAffx.28991.1.S1_at11/118+1055977..1059449hypothetical protein
LOC_Os08g02580OsAffx.28992.1.S1_at10/118+1062365..1065127hypothetical protein
LOC_Os08g02590OsAffx.28993.1.S1_at11/118+1067826..1068158expressed protein
LOC_Os08g02600OsAffx.5684.1.S1_at11/118+1068948..1069730expressed protein
LOC_Os08g02610NANA8+1075664..1076215hypothetical protein
LOC_Os08g02620OsAffx.5685.1.S1_at11/118+1077800..1080313hypothetical protein
LOC_Os08g02630Os.51086.1.S1_x_at11/118+1083391..1084388expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28991.1.S1_at--1011--2151Chr08:1058158..1058182 (25 bp)
ACAGCGTCGCTACAAATTCATGTTA
LOC_Os08g02570
OsAffx.28991.1.S1_at--324--6511Chr08:1058334..1058358 (25 bp)
GATATGTTCCTTGAACCGTCAGAAA
LOC_Os08g02570
OsAffx.28991.1.S1_at--744--2811Chr08:1058357..1058381 (25 bp)
AAGATTACTGGTTCTCTTCAGCCTT
LOC_Os08g02570
OsAffx.28991.1.S1_at--607--9531Chr08:1058371..1058543 (25 bp)
TCTTCAGCCTTATCGTCGACGAAAT
LOC_Os08g02570
OsAffx.28991.1.S1_at--13--4111Chr08:1058538..1058562 (25 bp)
CGAAATCGATTCTTGGGAGGAGCAT
LOC_Os08g02570
OsAffx.28991.1.S1_at--188--2831Chr08:1058875..1058899 (25 bp)
AAGTTTCCCCAAATCAGAAGCGCCG
LOC_Os08g02570
OsAffx.28991.1.S1_at--726--5411Chr08:1058891..1058915 (25 bp)
GAAGCGCCGATGATCTGCGATTAGT
LOC_Os08g02570
OsAffx.28991.1.S1_at--209--4611Chr08:1058907..1058931 (25 bp)
GCGATTAGTACTGGGAATGCTCAAC
LOC_Os08g02570
OsAffx.28991.1.S1_at--1070--9071Chr08:1058924..1058948 (25 bp)
TGCTCAACGGTATACATGCAAGTGA
LOC_Os08g02570
OsAffx.28991.1.S1_at--723--7711Chr08:1059206..1059230 (25 bp)
GGGTGTTCAAATTCTATGGACTCCA
LOC_Os08g02570
OsAffx.28991.1.S1_at--828--2031Chr08:1059274..1059298 (25 bp)
ACTATCCATATCTGAGGCCCCTAAA
LOC_Os08g02570
Target Sequence 
ACAGCGTCGCTACAAATTCATGTTAACGGAGACGATATGTTCCTTGAACCGTCAGAAAGATTACTGGTTCTCTTCAGCCT
TATCGTCGACGAAATCGATTCTTGGGAGGAGCATTTTGATAAGATTTCTATTGAGGAGAGGAGCAAAACTGATGAAGAAA
CTCTATTTAACGTGGAGGGAATCAAGATAAGTAAAAAATACTCCAAAAATCCTGAAAGCTGCAGAAAAGAGTACATAGTG
TTAACCATTATTCTTGCTGCTGAGGGAAAACTGAAGTTTCCCCAAATCAGAAGCGCCGATGATCTGCGATTAGTACTGGG
AATGCTCAACGGTATACATGCAAGTGAAATTAAGGGTGTTCAAATTCTATGGACTCCACAAGAAGAGGATGATGCTCTTT
CAGAAGAGAGGCTACTAAAGGACTATCCATATCTGAGGCCCCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis