Browse Element(s) Details


Os.51086.1.S1_x_at

Description gb:AK060602.1
DB_XREF= gi:32970620
TID=Os.51086.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H10, full insert sequence.
FL= gb:AK060602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0263011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02570OsAffx.28991.1.S1_at11/118+1055977..1059449hypothetical protein
LOC_Os08g02580OsAffx.28992.1.S1_at10/118+1062365..1065127hypothetical protein
LOC_Os08g02590OsAffx.28993.1.S1_at11/118+1067826..1068158expressed protein
LOC_Os08g02600OsAffx.5684.1.S1_at11/118+1068948..1069730expressed protein
LOC_Os08g02610NANA8+1075664..1076215hypothetical protein
LOC_Os08g02620OsAffx.5685.1.S1_at11/118+1077800..1080313hypothetical protein
LOC_Os08g02630Os.51086.1.S1_x_at11/118+1083391..1084388expressed protein
LOC_Os08g02640Os.5499.3.S1_a_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.2.S1_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.4.S1_x_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02650OsAffx.28995.1.S1_at11/118+1092332..1092919hypothetical protein
LOC_Os08g02660Os.52238.1.S1_at2/118+1100424..1101227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g02670Os.6822.1.S1_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_s_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_at2/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015979biological_processphotosynthesis
GO:0009523cellular_componentphotosystem II
GO:0009533cellular_componentchloroplast stromal thylakoid
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51086.1.S1_x_at--185--3551Chr08:1083901..1083925 (25 bp)
CATCGCGTGGGTGCTCTACAACATC
LOC_Os08g02630
Os.51086.1.S1_x_at--342--8991Chr08:1083863..1083887 (25 bp)
TGAACCAGCTGAACCGCATGCGGTC
LOC_Os08g02630
Os.51086.1.S1_x_at--1092--6371Chr08:1083667..1083691 (25 bp)
GATCGCCTGGGTTCTCTACAACATC
LOC_Os08g02630
Os.51086.1.S1_x_at--1140--9031Chr08:1083641..1083665 (25 bp)
TGCAGCCGGCGTTGAACCAGCTAAA
LOC_Os08g02630
Os.51086.1.S1_x_at--1102--8971Chr08:1083629..1083653 (25 bp)
TGAACCAGCTAAACCGCATGCGGTC
LOC_Os08g02630
Os.51086.1.S1_x_at--755--4671Chr08:1083610..1083634 (25 bp)
GCGGTCAGACTGAGAGCTTGAGCTT
LOC_Os08g02630
Os.51086.1.S1_x_at--1103--5911Chr08:1083591..1083615 (25 bp)
GAGCTTGAAGATTGCATCCGTACAT
LOC_Os08g02630
Os.51086.1.S1_x_at--435--8211Chr08:1083511..1083535 (25 bp)
GGAATGTGGTGTACTTATGCCTTAA
LOC_Os08g02630
Os.51086.1.S1_x_at--194--3151Chr08:1083488..1083512 (25 bp)
AATTAATCCTGTTCCTAATCCTCTC
LOC_Os08g02630
Os.51086.1.S1_x_at--197--571Chr08:1083471..1083495 (25 bp)
ATCCTCTCTTCCCTTGAACAAAAAT
LOC_Os08g02630
Os.51086.1.S1_x_at--623--9631Chr08:1083446..1083470 (25 bp)
TCAGTACAGCTCTTCTTCTTATTTG
LOC_Os08g02630
Target Sequence 
CATCGCGTGGGTGCTCTACAACATCCTCCAGCCGGCGCTGAACCAGCTGAACCGCATGCGGTCGGAGCAGGTGCTCGTCG
CCGGGCTCGGCCTGGGCGCGGCGGCGGGTGCCGGGCTCGCGTTCCCGCCCGAGGCGTCGGCGGCGCAGGAGGTGGCGAGG
CTGGCGGCGGAGGCGGCGGCGGCGGAAGGCGGCGACAACCGCGGCCTGCTGCTGCTGTTCGTGGTGGCGCCGGCGATCGC
CTGGGTTCTCTACAACATCCTGCAGCCGGCGTTGAACCAGCTAAACCGCATGCGGTCAGACTGAGAGCTTGAGCTTGAAG
ATTGCATCCGTACATGTGTGTACGTGGTGTGTTTTGAGGGTGGTGGAGTGGAGTGGAGTGGTAGTGACGTGGAATGTGGT
GTACTTATGCCTTAATTAATCCTGTTCCTAATCCTCTCTTCCCTTGAACAAAAATTCAGTACAGCTCTTCTTCTTATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51086.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis