Browse Element(s) Details


Os.38507.1.S1_at

Description gb:AK105326.1
DB_XREF= gi:32990535
TID=Os.38507.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A02, full insert sequence.
FL= gb:AK105326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g484809/11expressed protein
LOC_Os08g026702/11DNA polymerase III, delta subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48420NANA2+29643259..29648155retrotransposon protein, putative, unclassified
LOC_Os02g48430OsAffx.12549.1.S1_at11/112+29651473..29654045expressed protein
LOC_Os02g48430Os.6760.2.S1_at1/112+29651473..29654045expressed protein
LOC_Os02g48440OsAffx.14106.1.S1_at11/112+29658295..29658594hypothetical protein
LOC_Os02g48450Os.47737.1.S1_at11/112+29661874..29663793Caricain precursor, putative, expressed
LOC_Os02g48460Os.7122.1.S1_at11/112+29664832..29669151NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g48470Os.12751.1.S1_at11/112+29670153..29671174expressed protein
LOC_Os02g48480Os.38507.1.S1_at9/112+29671967..29672681expressed protein
LOC_Os02g48490OsAffx.24783.1.S1_at11/112+29679419..29680342hypothetical protein
LOC_Os02g48500OsAffx.12550.1.S1_at11/112+29684238..29684717hypothetical protein
LOC_Os02g48510OsAffx.25095.3.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48510OsAffx.25095.5.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48520OsAffx.12552.1.S1_at11/112+29693627..29693902hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38507.1.S1_at--635--2431Chr08:1105072..1105096 (25 bp)
AAAAGCCGCGGCGTTGTTGTCTTGC
LOC_Os08g02670
Os.38507.1.S1_at--683--5791Chr08:1106013..1106034 (22 bp)
GACCTGGAGGGGAGCAATTATGTTT
LOC_Os08g02670
Os.38507.1.S1_at--774--9111Chr02:29672569..29672593 (25 bp)
TGCTGCTCAGCTAATATGTAGTACT
LOC_Os02g48480
Os.38507.1.S1_at--625--4831Chr02:29672573..29672597 (25 bp)
GCTCAGCTAATATGTAGTACTTTTT
LOC_Os02g48480
Os.38507.1.S1_at--889--1551Chr02:29672577..29672601 (25 bp)
AGCTAATATGTAGTACTTTTTTGTG
LOC_Os02g48480
Os.38507.1.S1_at--54--3331Chr02:29672606..29672630 (25 bp)
CACTTGTTCCCCTTGAAGCTGCTTG
LOC_Os02g48480
Os.38507.1.S1_at--106--5411Chr02:29672620..29672644 (25 bp)
GAAGCTGCTTGCGTGTGCTATTGAT
LOC_Os02g48480
Os.38507.1.S1_at--247--2691Chr02:29672621..29672645 (25 bp)
AAGCTGCTTGCGTGTGCTATTGATA
LOC_Os02g48480
Os.38507.1.S1_at--328--4771Chr02:29672623..29672647 (25 bp)
GCTGCTTGCGTGTGCTATTGATAAG
LOC_Os02g48480
Os.38507.1.S1_at--119--4931Chr02:29672626..29672650 (25 bp)
GCTTGCGTGTGCTATTGATAAGAAA
LOC_Os02g48480
Os.38507.1.S1_at--211--4671Chr02:29672630..29672654 (25 bp)
GCGTGTGCTATTGATAAGAAAATTT
LOC_Os02g48480
Target Sequence 
AAAAGCCGCGGCGTTGTTGTCTTGCGTCGTCGTTGTGGTTGTCGTTCGTGTTTGGGGGGGAGCATAGTTCATTGGGGCCT
TGCAAGATGATTGAGGGGAGGAGGCACTCCGTTGACATCCCGATTTCGAGGGCTCTACTGGCCGTCATGAGGTCCAGATC
TCTGAGGGACCCTGAGACCAACTCGCTGGCCAAGTTCTCGGCGAAGAAGACCATCTGGGAGGGTTGTTCTCTCGAGGAAG
ATGACCTGGAGGGGAGCAATTATGTTTTGTGCTTCCCAATCTTGTCCTGAATNATNCAANANNTTCAATTCTAATACCAT
TATCTGCNCCTGTAGTACTCATCTCAGCCTNCCTGTGTGCTTGCGTTAGTTTCTNGTGACAATTACTGCTGCTCAGCTAA
TATGTAGTACTTTTTTGTGGGNNCACTTGTTCCCCTTGAAGCTGCTTGCGTGTGCTATTGATAAGAAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis