Browse Element(s) Details


Os.6760.2.S1_at

Description gb:CB676826
DB_XREF= gi:29680551
DB_XREF=OSJNEe13E24.f
CLONE=OSJNEe13E24
TID=Os.6760.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6760 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_196392.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g484301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48400Os.27633.1.A1_at7/112+29629988..29633482expressed protein
LOC_Os02g48410Os.28943.1.S1_x_at3/112+29639398..29642638retrotransposon protein, putative, unclassified
LOC_Os02g48420NANA2+29643259..29648155retrotransposon protein, putative, unclassified
LOC_Os02g48430OsAffx.12549.1.S1_at11/112+29651473..29654045expressed protein
LOC_Os02g48430Os.6760.2.S1_at1/112+29651473..29654045expressed protein
LOC_Os02g48440OsAffx.14106.1.S1_at11/112+29658295..29658594hypothetical protein
LOC_Os02g48450Os.47737.1.S1_at11/112+29661874..29663793Caricain precursor, putative, expressed
LOC_Os02g48460Os.7122.1.S1_at11/112+29664832..29669151NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g48470Os.12751.1.S1_at11/112+29670153..29671174expressed protein
LOC_Os02g48480Os.38507.1.S1_at9/112+29671967..29672681expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6760.2.S1_at--226--3131Chr02:27257360..27257384 (25 bp)
AATTTACCGAGACCGAGGCAGAGAT
NONE
Os.6760.2.S1_at--243--9951Chr02:27257356..27257380 (25 bp)
TACCGAGACCGAGGCAGAGATTTGT
NONE
Os.6760.2.S1_at--678--1791Chr02:27257349..27257373 (25 bp)
ACCGAGGCAGAGATTTGTCGATCAC
NONE
Os.6760.2.S1_at--634--2991Chr02:27257323..27257347 (25 bp)
AATGCTTCAAGAACCACCAATCCGG
NONE
Os.6760.2.S1_at--107--1452Chr02:29653161..29653185 (25 bp)
AGAACCACCAATCCGGCAATCTCTG
LOC_Os02g48430
Os.6760.2.S1_at--183--9251Chr02:27257279..27257303 (25 bp)
TCCTTCGTTCAAGCTTGGTATGATC
NONE
Os.6760.2.S1_at--699--3631Chr02:27257277..27257301 (25 bp)
CTTCGTTCAAGCTTGGTATGATCCA
NONE
Os.6760.2.S1_at--469--3951Chr02:27257209..27257233 (25 bp)
CGGCACGCGAGCTTCTTGGAGCTCC
NONE
Os.6760.2.S1_at--828--911Chr02:27257176..27257200 (25 bp)
AGGCTGAACACCGACACGCTATACT
NONE
Os.6760.2.S1_at--296--5631Chr02:27257164..27257188 (25 bp)
GACACGCTATACTTCACCGTGGTGG
NONE
Os.6760.2.S1_at--1110--3611Chr02:27257158..27257182 (25 bp)
CTATACTTCACCGTGGTGGAACGCC
NONE
Target Sequence 
AATTTACCGAGACCGAGGCAGAGATTTGTCGATCACNAATGCTTCAAGAACCACCAATCCGGCAATCTCTGATTCCGTTC
NTCCTTCGTTCAAGCTTGGTATGATCCANNAAGGCGTCTCGCCGCGGAGGGCCATCTCCAGCTTGTTGAGGCGGCACGCG
AGCTTCTTGGAGCTCCGGNGCTCCAGGCTGAACACCGACACGCTATACTTCACCGTGGTGGAACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6760.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis