Browse Element(s) Details


Os.12751.1.S1_at

Description gb:AK059816.1
DB_XREF= gi:32969834
TID=Os.12751.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.12751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B12, full insert sequence.
FL= gb:AK059816.1 gb:AK069489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4847011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48420NANA2+29643259..29648155retrotransposon protein, putative, unclassified
LOC_Os02g48430OsAffx.12549.1.S1_at11/112+29651473..29654045expressed protein
LOC_Os02g48430Os.6760.2.S1_at1/112+29651473..29654045expressed protein
LOC_Os02g48440OsAffx.14106.1.S1_at11/112+29658295..29658594hypothetical protein
LOC_Os02g48450Os.47737.1.S1_at11/112+29661874..29663793Caricain precursor, putative, expressed
LOC_Os02g48460Os.7122.1.S1_at11/112+29664832..29669151NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g48470Os.12751.1.S1_at11/112+29670153..29671174expressed protein
LOC_Os02g48480Os.38507.1.S1_at9/112+29671967..29672681expressed protein
LOC_Os02g48490OsAffx.24783.1.S1_at11/112+29679419..29680342hypothetical protein
LOC_Os02g48500OsAffx.12550.1.S1_at11/112+29684238..29684717hypothetical protein
LOC_Os02g48510OsAffx.25095.3.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48510OsAffx.25095.5.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48520OsAffx.12552.1.S1_at11/112+29693627..29693902hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12751.1.S1_at--139--2111Chr02:29670651..29670675 (25 bp)
ACATCCTCTACAAGATGCGCTCCGG
LOC_Os02g48470
Os.12751.1.S1_at--986--2611Chr02:29670802..29670826 (25 bp)
AACCGCCATGGCGTACTGAGAGCTT
LOC_Os02g48470
Os.12751.1.S1_at--984--8891Chr02:29670818..29670842 (25 bp)
TGAGAGCTTCTCACATGTTCCTCCA
LOC_Os02g48470
Os.12751.1.S1_at--32--2411Chr02:29670848..29670872 (25 bp)
AAACATGACCTTTTCTTGGTCGCCG
LOC_Os02g48470
Os.12751.1.S1_at--594--4831Chr02:29670999..29671023 (25 bp)
GCTCACTACGTGATCTGTTTTTTGT
LOC_Os02g48470
Os.12751.1.S1_at--1143--6391Chr02:29671027..29671051 (25 bp)
GATCTAGTGTCCTGTAGAGGCCGAA
LOC_Os02g48470
Os.12751.1.S1_at--72--6231Chr02:29671043..29671067 (25 bp)
GAGGCCGAATGTATGTTCGTTCTTT
LOC_Os02g48470
Os.12751.1.S1_at--668--731Chr02:29671055..29671079 (25 bp)
ATGTTCGTTCTTTCAATTCTTTTTG
LOC_Os02g48470
Os.12751.1.S1_at--1025--10531Chr02:29671071..29671095 (25 bp)
TTCTTTTTGGAGTTCGTTGGGCGAT
LOC_Os02g48470
Os.12751.1.S1_at--507--7571Chr02:29671089..29671113 (25 bp)
GGGCGATGTAAATGTCTCCGGTCAA
LOC_Os02g48470
Os.12751.1.S1_at--703--3791Chr02:29671104..29671128 (25 bp)
CTCCGGTCAAATTCCTTATGCTTTT
LOC_Os02g48470
Target Sequence 
ACATCCTCTACAAGATGCGCTCCGGCGTCCGGCGGCTCGTCACCTCGCACTCGCTGCCCACCACGCACAGGGCGGCGGCG
GCGGCGTCGGCGTCGGCCCAGTGCAAGCCGGCGGCCACGTTCAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCAT
GGCGTACTGAGAGCTTCTCACATGTTCCTCCAGTGAGAAACATGACCTTTTCTTGGTCGCCGTCTCCATGGGATCCAAAT
GAAGAAGAAGCTCAGGGAGATTGATATAATATATGGTGATGAAGATGCAACTACGATTACATGTAAAATTACACGGTAAA
TTTGATGAATGATGAAAAAAAAAATTGTAGCTCACTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCG
AATGTATGTTCGTTCTTTCAATTCTTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis