Browse Element(s) Details


Os.7122.1.S1_at

Description gb:AK070855.1
DB_XREF= gi:32980878
TID=Os.7122.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023066G02, full insert sequence.
FL= gb:AK070855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4846011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48410Os.28943.1.S1_x_at3/112+29639398..29642638retrotransposon protein, putative, unclassified
LOC_Os02g48420NANA2+29643259..29648155retrotransposon protein, putative, unclassified
LOC_Os02g48430OsAffx.12549.1.S1_at11/112+29651473..29654045expressed protein
LOC_Os02g48430Os.6760.2.S1_at1/112+29651473..29654045expressed protein
LOC_Os02g48440OsAffx.14106.1.S1_at11/112+29658295..29658594hypothetical protein
LOC_Os02g48450Os.47737.1.S1_at11/112+29661874..29663793Caricain precursor, putative, expressed
LOC_Os02g48460Os.7122.1.S1_at11/112+29664832..29669151NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g48470Os.12751.1.S1_at11/112+29670153..29671174expressed protein
LOC_Os02g48480Os.38507.1.S1_at9/112+29671967..29672681expressed protein
LOC_Os02g48490OsAffx.24783.1.S1_at11/112+29679419..29680342hypothetical protein
LOC_Os02g48500OsAffx.12550.1.S1_at11/112+29684238..29684717hypothetical protein
LOC_Os02g48510OsAffx.25095.3.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48510OsAffx.25095.5.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48520OsAffx.12552.1.S1_at11/112+29693627..29693902hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006694biological_processsteroid biosynthesis
GO:0003854molecular_function3-beta-hydroxy-delta5-steroid dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7122.1.S1_at--214--6151Chr02:29668718..29668742 (25 bp)
GAGGTGAGGCCCGAGTGTTATTATC
LOC_Os02g48460
Os.7122.1.S1_at--124--5691Chr02:29668750..29668774 (25 bp)
GACTTGTGAACGACTTGTGAACTGC
LOC_Os02g48460
Os.7122.1.S1_at--333--4211Chr02:29668777..29668801 (25 bp)
CCGCGCAATCCGTCGATTTGTGTGT
LOC_Os02g48460
Os.7122.1.S1_at--152--9351Chr02:29668805..29668829 (25 bp)
TCGCGTGCTTCTTCCAGATCACATT
LOC_Os02g48460
Os.7122.1.S1_at--209--1251Chr02:29668820..29668844 (25 bp)
AGATCACATTTCAGGTCCCTTCGGT
LOC_Os02g48460
Os.7122.1.S1_at--529--9311Chr02:29668835..29668859 (25 bp)
TCCCTTCGGTTTGACTGTATGAGAT
LOC_Os02g48460
Os.7122.1.S1_at--247--5291Chr02:29668926..29668950 (25 bp)
GAATGGGATGATTGCACGTTGCCGC
LOC_Os02g48460
Os.7122.1.S1_at--397--7071Chr02:29668969..29668993 (25 bp)
GTAAGGTCAAAGTCCTCTGATCTTG
LOC_Os02g48460
Os.7122.1.S1_at--232--5631Chr02:29669033..29669057 (25 bp)
GACACACGCTTGCATTTGTGCTGAT
LOC_Os02g48460
Os.7122.1.S1_at--1032--8751Chr02:29669064..29669088 (25 bp)
TGTAGGCATGCAGTTTCAGTTTTTG
LOC_Os02g48460
Os.7122.1.S1_at--295--8491Chr02:29669127..29669151 (25 bp)
TGGCTGGCATGTTTGATTGTTTCCT
LOC_Os02g48460
Target Sequence 
GAGGTGAGGCCCGAGTGTTATTATCGGAGTTGGACTTGTGAACGACTTGTGAACTGCAGCCGCGCAATCCGTCGATTTGT
GTGTGGCTCGCGTGCTTCTTCCAGATCACATTTCAGGTCCCTTCGGTTTGACTGTATGAGATGATTTTTCTGTCGAATGA
ATTGGCGTATGAGATAATTTTTCTGTCGATTGATTTTTCGGTTTGACTGAATGGGATGATTGCACGTTGCCGCAAGGAAT
ATATGGTGTAAGTAAGGTCAAAGTCCTCTGATCTTGGAAAGAATTGGGCAGAAACATATCGTAGGAACAAAACGTGACAC
ACGCTTGCATTTGTGCTGATGAGAAATGTAGGCATGCAGTTTCAGTTTTTGCATTGTACTGATGAGAATGATGTTTGTGA
TGGTTGCAATGGCTGGCATGTTTGATTGTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis