Browse Element(s) Details


Os.5499.4.S1_x_at

Description gb:AK104304.1
DB_XREF= gi:32989513
TID=Os.5499.4
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for mitochondrial ribosomal protein S14, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-D05, full insert sequence.
FL= gb:AK104304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0264011/11Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02580OsAffx.28992.1.S1_at10/118+1062365..1065127hypothetical protein
LOC_Os08g02590OsAffx.28993.1.S1_at11/118+1067826..1068158expressed protein
LOC_Os08g02600OsAffx.5684.1.S1_at11/118+1068948..1069730expressed protein
LOC_Os08g02610NANA8+1075664..1076215hypothetical protein
LOC_Os08g02620OsAffx.5685.1.S1_at11/118+1077800..1080313hypothetical protein
LOC_Os08g02630Os.51086.1.S1_x_at11/118+1083391..1084388expressed protein
LOC_Os08g02640Os.5499.3.S1_a_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.2.S1_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.4.S1_x_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02650OsAffx.28995.1.S1_at11/118+1092332..1092919hypothetical protein
LOC_Os08g02660Os.52238.1.S1_at2/118+1100424..1101227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g02670Os.6822.1.S1_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_s_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_at2/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02680OsAffx.28996.1.S1_at10/118+1111027..1113308hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006121biological_processmitochondrial electron transport, succinate to ubiquinone
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0045281cellular_componentsuccinate dehydrogenase complex
GO:0000104molecular_functionsuccinate dehydrogenase activity
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5499.4.S1_x_at--50--5751Chr08:1087688..1087712 (25 bp)
GACGGCATGTACGAGTGCATCCTCT
LOC_Os08g02640
Os.5499.4.S1_x_at--372--7951Chr08:1085318..1085342 (25 bp)
GGATACAGGACAGCCGTGACCAGTT
LOC_Os08g02640
Os.5499.4.S1_x_at--1048--7371Chr08:1085303..1085327 (25 bp)
GTGACCAGTTCACTAAGGAGCGCCT
LOC_Os08g02640
Os.5499.4.S1_x_at--730--4471Chr08:1085282..1085306 (25 bp)
GCCTGGATTCCATCAACGACGAGTT
LOC_Os08g02640
Os.5499.4.S1_x_at--1153--5751Chr08:1085265..1085289 (25 bp)
GACGAGTTCAAGCTGTACCGCTGCC
LOC_Os08g02640
Os.5499.4.S1_x_at--277--7391Chr08:1085148..1085172 (25 bp)
GTGAGCAGTATATCTCTCTTCATGA
LOC_Os08g02640
Os.5499.4.S1_x_at--686--9351Chr08:1085042..1085135 (25 bp)
TCGAAAAATTGATTCCCTTCTGGGC
LOC_Os08g02640
Os.5499.4.S1_x_at--584--10591Chr08:1085025..1085049 (25 bp)
TTCTGGGCCTCCGATCTGATGACTT
LOC_Os08g02640
Os.5499.4.S1_x_at--879--6311Chr08:1085008..1085032 (25 bp)
GATGACTTCCATTTCCATCAGATGG
LOC_Os08g02640
Os.5499.4.S1_x_at--971--10791Chr08:1084913..1084937 (25 bp)
TTGTTCACCGTCCATTCCATTATGT
LOC_Os08g02640
Os.5499.4.S1_x_at--120--6291Chr08:1084839..1084863 (25 bp)
GATGTTGAACATGCCCTTCATATTT
LOC_Os08g02640
Target Sequence 
GACGGCATGTACGAGTGCATCCTCTGCGCCTGCTGCTCCACCTCCTGCCCCTCCTACTGGTGGAACCCCGAGGAGTACCT
CGGCCCCGCCGCGCTCCTCCACGCCAACAGGTGGATACAGGACAGCCGTGACCAGTTCACTAAGGAGCGCCTGGATTCCA
TCAACGACGAGTTCAAGCTGTACCGCTGCCACACCATCAAGAACTGCACACACGCCTGCCCCAAGGGCCTCAACCCAGCG
AAGCACATCGACACAATCAAGAAGCTCCAGCTCGAGGCCTGAGTGAGCAGTATATCTCTCTTCATGAGATGAAACTCTGT
CGAAAAATTGATTCCCTTCTGGGCCTCCGATCTGATGACTTCCATTTCCATCAGATGGAGGGAGCATTGTAGGGAGTGAA
TAATTTGCTACCGTATTTTACGTTTTGTTCTGTATCTAATTCGGTTTGTTGTTCACCGTCCATTCCATTATGTCGTGCGG
TTTATGCATGAAGTAATTCATGGATTTTACCTTTGTTTTTGTGATGTTGAACATGCCCTTCATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5499.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis