Browse Element(s) Details


Os.38507.1.S1_s_at

Description gb:AK105326.1
DB_XREF= gi:32990535
TID=Os.38507.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A02, full insert sequence.
FL= gb:AK105326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0267011/11DNA polymerase III, delta subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02620OsAffx.5685.1.S1_at11/118+1077800..1080313hypothetical protein
LOC_Os08g02630Os.51086.1.S1_x_at11/118+1083391..1084388expressed protein
LOC_Os08g02640Os.5499.3.S1_a_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.2.S1_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.4.S1_x_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02650OsAffx.28995.1.S1_at11/118+1092332..1092919hypothetical protein
LOC_Os08g02660Os.52238.1.S1_at2/118+1100424..1101227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g02670Os.6822.1.S1_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_s_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_at2/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02680OsAffx.28996.1.S1_at10/118+1111027..1113308hypothetical protein
LOC_Os08g02690Os.7459.1.S1_at11/118+1114784..1120093MA3 domain-containing protein, putative, expressed
LOC_Os08g02700Os.10579.1.S1_at11/118+1121539..1123208Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os08g02710OsAffx.16795.1.S1_at11/118+1125211..1129368hypothetical protein
LOC_Os08g02720OsAffx.28997.1.S1_at11/118+1131781..1133349hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38507.1.S1_s_at--349--7651Chr08:1105866..1105890 (25 bp)
GGGAGGAGGCACTCCGTTGACATCC
LOC_Os08g02670
Os.38507.1.S1_s_at--209--6651Chr08:1105881..1105905 (25 bp)
GTTGACATCCCGATTTCGAGGGCTC
LOC_Os08g02670
Os.38507.1.S1_s_at--268--191Chr08:1105893..1105917 (25 bp)
ATTTCGAGGGCTCTACTGGCCGTCA
LOC_Os08g02670
Os.38507.1.S1_s_at--1020--9531Chr08:1105904..1105928 (25 bp)
TCTACTGGCCGTCATGAGGTCCAGA
LOC_Os08g02670
Os.38507.1.S1_s_at--74--4511Chr08:1105911..1105935 (25 bp)
GCCGTCATGAGGTCCAGATCTCTGA
LOC_Os08g02670
Os.38507.1.S1_s_at--356--9231Chr08:1105923..1105947 (25 bp)
TCCAGATCTCTGAGGGACCCTGAGA
LOC_Os08g02670
Os.38507.1.S1_s_at--875--1051Chr08:1105935..1105959 (25 bp)
AGGGACCCTGAGACCAACTCGCTGG
LOC_Os08g02670
Os.38507.1.S1_s_at--593--3911Chr08:1105956..1105980 (25 bp)
CTGGCCAAGTTCTCGGCGAAGAAGA
LOC_Os08g02670
Os.38507.1.S1_s_at--168--6731Chr08:1105964..1105988 (25 bp)
GTTCTCGGCGAAGAAGACCATCTGG
LOC_Os08g02670
Os.38507.1.S1_s_at--1072--5831Chr08:1105979..1106003 (25 bp)
GACCATCTGGGAGGGTTGTTCTCTC
LOC_Os08g02670
Os.38507.1.S1_s_at--420--3551Chr08:1105982..1106006 (25 bp)
CATCTGGGAGGGTTGTTCTCTCGAG
LOC_Os08g02670
Target Sequence 
GGGAGGAGGCACTCCGTTGACATCCCGATTTCGAGGGCTCTACTGGCCGTCATGAGGTCCAGATCTCTGAGGGACCCTGA
GACCAACTCGCTGGCCAAGTTCTCGGCGAAGAAGACCATCTGGGAGGGTTGTTCTCTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38507.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis