Browse Element(s) Details


Os.7459.1.S1_at

Description gb:AK102447.1
DB_XREF= gi:32987656
TID=Os.7459.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093O03, full insert sequence.
FL= gb:AK102447.1 gb:AK104476.1 gb:AK067413.1 gb:AK060858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0269011/11MA3 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02650OsAffx.28995.1.S1_at11/118+1092332..1092919hypothetical protein
LOC_Os08g02660Os.52238.1.S1_at2/118+1100424..1101227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g02670Os.6822.1.S1_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_s_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_at2/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02680OsAffx.28996.1.S1_at10/118+1111027..1113308hypothetical protein
LOC_Os08g02690Os.7459.1.S1_at11/118+1114784..1120093MA3 domain-containing protein, putative, expressed
LOC_Os08g02700Os.10579.1.S1_at11/118+1121539..1123208Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os08g02710OsAffx.16795.1.S1_at11/118+1125211..1129368hypothetical protein
LOC_Os08g02720OsAffx.28997.1.S1_at11/118+1131781..1133349hypothetical protein
LOC_Os08g02730Os.57407.1.S1_at11/118+1142598..1144210expressed protein
LOC_Os08g02730Os.1678.1.S1_at1/118+1142598..1144210expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7459.1.S1_at--49--5131Chr08:1115285..1115309 (25 bp)
GCACAGTTGCGCTTTGTTTAGCTGG
LOC_Os08g02690
Os.7459.1.S1_at--99--8511Chr08:1115240..1115264 (25 bp)
TGGCACCAACATTGTGTCAGTGAAT
LOC_Os08g02690
Os.7459.1.S1_at--223--431Chr08:1115217..1115241 (25 bp)
ATCATATCTGTTGGGCTGTTGGGTC
LOC_Os08g02690
Os.7459.1.S1_at--940--7691Chr08:1115197..1115221 (25 bp)
GGGTCAGTGGTATATCAATCATCAG
LOC_Os08g02690
Os.7459.1.S1_at--526--1391Chr08:1115170..1115194 (25 bp)
AGACGCAATCAACATGCCAGCTGTA
LOC_Os08g02690
Os.7459.1.S1_at--440--3391Chr08:1115153..1115177 (25 bp)
CAGCTGTACTGTTTTGCATCTTGGC
LOC_Os08g02690
Os.7459.1.S1_at--197--7931Chr08:1115087..1115111 (25 bp)
GGATTTTCCAAGCATCCTAGGCTTC
LOC_Os08g02690
Os.7459.1.S1_at--1145--10591Chr08:1115065..1115089 (25 bp)
TTCTGCGAGCAGCTAGGTGACGACA
LOC_Os08g02690
Os.7459.1.S1_at--592--191Chr08:1114999..1115023 (25 bp)
ATTTCTTCCTCAGCATTGGTACTAC
LOC_Os08g02690
Os.7459.1.S1_at--440--3571Chr08:1114986..1115010 (25 bp)
CATTGGTACTACCTCCGTTCAAAGG
LOC_Os08g02690
Os.7459.1.S1_at--411--10231Chr08:1114926..1114950 (25 bp)
TTTGAGATATACCATCCTTACCCAC
LOC_Os08g02690
Target Sequence 
GCACAGTTGCGCTTTGTTTAGCTGGTTTTACAATGGGGATTGGATTGGCACCAACATTGTGTCAGTGAATCATATCTGTT
GGGCTGTTGGGTCAGTGGTATATCAATCATCAGAAAGACGCAATCAACATGCCAGCTGTACTGTTTTGCATCTTGGCGCA
ATCAACATGCCAATGGTATATCACATCTTCATTTCCAAGGATTTTCCAAGCATCCTAGGCTTCTGCGAGCAGCTAGGTGA
CGACAAAGGCATCAAGGTTGTAGCGATGAACGAGCAGAAAGACCCTATTTCTTCCTCAGCATTGGTACTACCTCCGTTCA
AAGGGAAAATTGGAACCATGCTATTATAATTTTGTAAAATTTGAGATATACCATCCTTACCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis