Browse Element(s) Details


OsAffx.25598.1.S1_x_at

Description tigr:9631.m04591
TID=OsAffx.25598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g472467/11ACT domain-containing protein, putative
LOC_Os03g472524/11hypothetical protein
LOC_Os08g025001/11ACT domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47200NANA3+26665460..26665930bZIP transcription factor family protein
LOC_Os03g47210NANA3+26671205..26671801expressed protein
LOC_Os03g47230Os.51350.1.S1_at5/113+26680250..26680597Phytosulfokines 3 precursor, putative
LOC_Os03g47240OsAffx.25597.1.S1_at10/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.25952.1.S1_s_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_x_at2/113+26681942..26685381expressed protein
LOC_Os03g47246OsAffx.25598.1.S1_x_at7/113+26685956..26686324ACT domain-containing protein, putative
LOC_Os03g47252OsAffx.25598.1.S1_x_at4/113+26687320..26688208hypothetical protein
LOC_Os03g47260NANA3+26689835..26690760expressed protein
LOC_Os03g47270Os.55444.1.S1_at11/113+26695971..26696832expressed protein
LOC_Os03g47280Os.56080.1.S1_at10/113+26701207..26701873VQ motif family protein, expressed
LOC_Os03g47290OsAffx.3540.1.S1_at11/113+26703572..26704006hypothetical protein
LOC_Os03g47300NANA3+26704929..26705603hypothetical protein
LOC_Os03g47310NANA3+26710395..26714888transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006521biological_processregulation of amino acid metabolism
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25598.1.S1_x_at--785--9332Chr05:21490502..21490526 (25 bp)
TCGCCGCTAGGAGTGCTTCGAGCAA
NONE
OsAffx.25598.1.S1_x_at--66--6151Chr03:26688062..26688086 (25 bp)
GAGGGTGGAGGAGTGCTTGCGACAA
LOC_Os03g47252
OsAffx.25598.1.S1_x_at--813--2772Chr05:21490311..21490443 (24 bp)
AAGAGGTGGCAAGAACAAGTCAGCA
NONE
OsAffx.25598.1.S1_x_at--297--1432Chr06:16054664..16054883 (25 bp)
AGAACAAGTCAGCAGGGAAAATCAC
NONE
OsAffx.25598.1.S1_x_at--1049--9211Chr03:26686266..26686290 (25 bp)
TCCACGGTGACTCCAGCAGCGTCGG
LOC_Os03g47246
OsAffx.25598.1.S1_x_at--1135--1631Chr03:26686249..26686273 (25 bp)
AGCGTCGGCGGCAGTGCCGTGGCCA
LOC_Os03g47246
OsAffx.25598.1.S1_x_at--950--1711Chr03:26686182..26686206 (25 bp)
ACCAGCTCATGTCGCCTGACCGTGA
LOC_Os03g47246
OsAffx.25598.1.S1_x_at--20--8711Chr03:26686173..26686197 (25 bp)
TGTCGCCTGACCGTGACCAGGAGGA
LOC_Os03g47246
OsAffx.25598.1.S1_x_at--213--9231Chr03:26686113..26686137 (25 bp)
TCCAGAGCTGCGTGGAGCGCGGCTA
LOC_Os03g47246
OsAffx.25598.1.S1_x_at--788--7491Chr03:26686084..26686108 (25 bp)
GTGGTCACCGTGCAATGCCGCTACC
LOC_Os03g47246
OsAffx.25598.1.S1_x_at--762--9672Chr08:1009263..1009668 (25 bp)
TCACCGACATGGACTACGTTGTGTT
LOC_Os08g02500
Target Sequence 
TCGCCGCTAGGAGTGCTTCGAGCAAGAAGAGGGTGGAGGAGTGCTTGCGACAAGAAGTCTACGAGAAGGCACCGACGCCG
GCAAGAGGTGGCAAGAACAAGTCAGCAGGGAAAATCACCATTGGCCTCTTCGGCGACGAGGTCCCCGCCGGGCCACCCCT
CGGTTGCCTCGTCTTCCTCCGCAACGAGGAGGCCGACACCGAGAGGATGGCGCGCATCGAGGCCCACCTCGGACACCTCC
TCCACGGTGACTCCAGCAGCGTCGGCGGCAGTGCCGTGGCCACTGTCCCCGCCGCCAGCGTCGCGCACGCCGAGCGCCGC
CTCCACCAGCTCATGTCGCCTGACCGTGACCAGGAGGAGCGCGCGACGACGTCCCCGAGACCCGCCGTGTCCGTCCAGAG
CTGCGTGGAGCGCGGCTACTCGGTGGTCACCGTGCAATGCCGCTACCGCCCCAAGCTGCTCCTCGATGTCGTCTGCACGC
TCACCGACATGGACTACGTTGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25598.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis