Browse Element(s) Details


OsAffx.3540.1.S1_at

Description tigr:9631.m04595
TID=OsAffx.3540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4729011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47230Os.51350.1.S1_at5/113+26680250..26680597Phytosulfokines 3 precursor, putative
LOC_Os03g47240OsAffx.25597.1.S1_at10/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.25952.1.S1_s_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_x_at2/113+26681942..26685381expressed protein
LOC_Os03g47246OsAffx.25598.1.S1_x_at7/113+26685956..26686324ACT domain-containing protein, putative
LOC_Os03g47252OsAffx.25598.1.S1_x_at4/113+26687320..26688208hypothetical protein
LOC_Os03g47260NANA3+26689835..26690760expressed protein
LOC_Os03g47270Os.55444.1.S1_at11/113+26695971..26696832expressed protein
LOC_Os03g47280Os.56080.1.S1_at10/113+26701207..26701873VQ motif family protein, expressed
LOC_Os03g47290OsAffx.3540.1.S1_at11/113+26703572..26704006hypothetical protein
LOC_Os03g47300NANA3+26704929..26705603hypothetical protein
LOC_Os03g47310NANA3+26710395..26714888transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47320NANA3+26717451..26720025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.47463.1.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.14491.2.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3540.1.S1_at--1032--2631Chr03:26703609..26703633 (25 bp)
AACCATCACCTGATCGTAGCTCCAA
LOC_Os03g47290
OsAffx.3540.1.S1_at--912--3851Chr03:26703618..26703642 (25 bp)
CTGATCGTAGCTCCAACCTTGACCT
LOC_Os03g47290
OsAffx.3540.1.S1_at--740--531Chr03:26703764..26703788 (25 bp)
ATCGCCACTCCTCTAGTTGGTGCAC
LOC_Os03g47290
OsAffx.3540.1.S1_at--93--6631Chr03:26703779..26703803 (25 bp)
GTTGGTGCACAACACACTCGACACC
LOC_Os03g47290
OsAffx.3540.1.S1_at--116--7571Chr03:26703831..26703855 (25 bp)
GGGCCGTCCACAGGTACAATGTCCA
LOC_Os03g47290
OsAffx.3540.1.S1_at--336--4371Chr03:26703838..26703862 (25 bp)
CCACAGGTACAATGTCCATGGCCGC
LOC_Os03g47290
OsAffx.3540.1.S1_at--1011--2771Chr03:26703872..26703896 (25 bp)
AAGAGGAAAGTACAGCCGTTGCCAG
LOC_Os03g47290
OsAffx.3540.1.S1_at--47--1171Chr03:26703880..26703904 (25 bp)
AGTACAGCCGTTGCCAGATGAAAAA
LOC_Os03g47290
OsAffx.3540.1.S1_at--182--5151Chr03:26703909..26703933 (25 bp)
GCAACACCAGCCGTAGGTTTGGAGT
LOC_Os03g47290
OsAffx.3540.1.S1_at--1037--7571Chr03:26703937..26703961 (25 bp)
GGGCTACTTCGTGATGTTCTTATCC
LOC_Os03g47290
OsAffx.3540.1.S1_at--860--8791Chr03:26703951..26703975 (25 bp)
TGTTCTTATCCCCTTTGATGATGCC
LOC_Os03g47290
Target Sequence 
AACCATCACCTGATCGTAGCTCCAACCTTGACCTCTCCCCGTCCAATGACCACGACAGCACCGACGCCTGCACCGACCCT
ACCGCCACTCCTCCTGTTGGCGCGACGCACCTGCCCCTGATCTCGTCGTTGCACACCGCGCCTACCCTCACCACCATCGC
CACTCCTCTAGTTGGTGCACAACACACTCGACACCACGCCGCTCAAAATCTGCACCACCTTGGGGCCGTCCACAGGTACA
ATGTCCATGGCCGCCATGATGAGAAGAGGAAAGTACAGCCGTTGCCAGATGAAAAAAAAAGCAACACCAGCCGTAGGTTT
GGAGTTGGGGGCTACTTCGTGATGTTCTTATCCCCTTTGATGATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis