Browse Element(s) Details


OsAffx.25597.1.S1_at

Description tigr:9631.m04590
TID=OsAffx.25597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4724010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47190Os.54665.1.S1_at11/113+26655415..26657212expressed protein
LOC_Os03g47200NANA3+26665460..26665930bZIP transcription factor family protein
LOC_Os03g47210NANA3+26671205..26671801expressed protein
LOC_Os03g47230Os.51350.1.S1_at5/113+26680250..26680597Phytosulfokines 3 precursor, putative
LOC_Os03g47240OsAffx.25597.1.S1_at10/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.25952.1.S1_s_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_x_at2/113+26681942..26685381expressed protein
LOC_Os03g47246OsAffx.25598.1.S1_x_at7/113+26685956..26686324ACT domain-containing protein, putative
LOC_Os03g47252OsAffx.25598.1.S1_x_at4/113+26687320..26688208hypothetical protein
LOC_Os03g47260NANA3+26689835..26690760expressed protein
LOC_Os03g47270Os.55444.1.S1_at11/113+26695971..26696832expressed protein
LOC_Os03g47280Os.56080.1.S1_at10/113+26701207..26701873VQ motif family protein, expressed
LOC_Os03g47290OsAffx.3540.1.S1_at11/113+26703572..26704006hypothetical protein
LOC_Os03g47300NANA3+26704929..26705603hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25597.1.S1_at--431--7091Chr03:26682102..26682126 (25 bp)
GTCAAGCTGGCTGTATTTCTAGAAC
LOC_Os03g47240
OsAffx.25597.1.S1_at--349--10271Chr03:26682117..26682141 (25 bp)
TTTCTAGAACAATCTTCGTGGCTTC
LOC_Os03g47240
OsAffx.25597.1.S1_at--544--2451Chr03:26682124..26682148 (25 bp)
AACAATCTTCGTGGCTTCGATGGAC
LOC_Os03g47240
OsAffx.25597.1.S1_at--533--8471Chr03:26682135..26682159 (25 bp)
TGGCTTCGATGGACGGGCACTACCT
LOC_Os03g47240
OsAffx.25597.1.S1_at--994--8231Chr03:26682150..26682174 (25 bp)
GGCACTACCTTTCCCTTGGGTGTGA
LOC_Os03g47240
OsAffx.25597.1.S1_at--411--4311Chr03:26682157..26682181 (25 bp)
CCTTTCCCTTGGGTGTGAGGAGAAT
LOC_Os03g47240
OsAffx.25597.1.S1_at--817--2051Chr03:26683143..26683166 (24 bp)
ACTTCGCCGTCTCTGACCGGAGAAA
LOC_Os03g47240
OsAffx.25597.1.S1_at--662--9971Chr03:26683181..26683205 (25 bp)
TAGCGAGGGCCAAGAAACAGAAGAA
LOC_Os03g47240
OsAffx.25597.1.S1_at--1017--931Chr03:26683235..26683259 (25 bp)
AGGAATTCAGGATGCGGCTCTCCTT
LOC_Os03g47240
OsAffx.25597.1.S1_at--1159--4551NONE
GCGCCGTCGTGATTGGAGTGATCTC
NONE
OsAffx.25597.1.S1_at--847--3991Chr03:26684944..26684965 (22 bp)
CGTGATTGGAGTGATCTCTGGGAAT
LOC_Os03g47240
Target Sequence 
GTCAAGCTGGCTGTATTTCTAGAACAATCTTCGTGGCTTCGATGGACGGGCACTACCTTTCCCTTGGGTGTGAGGAGAAT
GGTCAACATGAAGTACCGCCTGCCCACTTCGCCGTCTCTGACCGGAGAAATCGTGGGGAAAAAATAGCGAGGGCCAAGAA
ACAGAAGAACCCGCGGGGAGAAGGCGAGAGGGGGGATCAGGAATTCAGGATGCGGCTCTCCTTCCCCCTGGTGGCCGGCG
CCGTCGTGATTGGAGTGATCTCTGGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis