Browse Element(s) Details


Os.54665.1.S1_at

Description gb:AK106417.1
DB_XREF= gi:32991626
TID=Os.54665.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-A07, full insert sequence.
FL= gb:AK106417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4719011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47140Os.22796.1.S1_at11/113+26628429..26631307expressed protein
LOC_Os03g47149NANA3+26637611..26639162hypothetical protein
LOC_Os03g47160OsAffx.3538.1.S1_at4/113+26640448..26640906hypothetical protein
LOC_Os03g47169Os.51572.1.S1_x_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47169OsAffx.25595.2.S1_x_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47169OsAffx.25595.2.S1_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47178NANA3+26644835..26645222hypothetical protein
LOC_Os03g47190Os.54665.1.S1_at11/113+26655415..26657212expressed protein
LOC_Os03g47200NANA3+26665460..26665930bZIP transcription factor family protein
LOC_Os03g47210NANA3+26671205..26671801expressed protein
LOC_Os03g47230Os.51350.1.S1_at5/113+26680250..26680597Phytosulfokines 3 precursor, putative
LOC_Os03g47240OsAffx.25597.1.S1_at10/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.25952.1.S1_s_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_x_at2/113+26681942..26685381expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54665.1.S1_at--883--431Chr03:26656056..26656080 (25 bp)
ATCTTTCCCATCTTAACACTCCATT
LOC_Os03g47190
Os.54665.1.S1_at--649--2171Chr03:26656041..26656065 (25 bp)
ACACTCCATTTCTATTATCACAGGG
LOC_Os03g47190
Os.54665.1.S1_at--6--631Chr03:26655948..26655972 (25 bp)
ATGCTTCACCTACAACATCCATGGC
LOC_Os03g47190
Os.54665.1.S1_at--215--6031Chr03:26655866..26655890 (25 bp)
GAGATGGCCAGAGCCGGCAAGTCCA
LOC_Os03g47190
Os.54665.1.S1_at--266--5931Chr03:26655839..26655863 (25 bp)
GAGCAGCAGATCTCCTCGTGGGAGA
LOC_Os03g47190
Os.54665.1.S1_at--682--7971Chr03:26655814..26655838 (25 bp)
GGATCGCAGAGGACATCTCCAACAT
LOC_Os03g47190
Os.54665.1.S1_at--855--2051Chr03:26655769..26655793 (25 bp)
ACTTCTCCCAGTCGATACAACAATG
LOC_Os03g47190
Os.54665.1.S1_at--204--6411Chr03:26655714..26655738 (25 bp)
GATCGGCACGAGGATAGAGACCCTA
LOC_Os03g47190
Os.54665.1.S1_at--294--6011Chr03:26655672..26655696 (25 bp)
GAGAGAAACCGTCTGTGACATGCTT
LOC_Os03g47190
Os.54665.1.S1_at--423--7371Chr03:26655658..26655682 (25 bp)
GTGACATGCTTGCTTCACACTGTAC
LOC_Os03g47190
Os.54665.1.S1_at--206--10511Chr03:26655645..26655669 (25 bp)
TTCACACTGTACATTGGCAGCTGCA
LOC_Os03g47190
Target Sequence 
ATCTTTCCCATCTTAACACTCCATTTCTATTATCACAGGGGAGGATGCAAAGCCCTCGACCTCAGGGAGCTCGCCACCAT
CCGAGGGCTTCATCGGCGCCACCTCACCATGCTTCACCTACAACATCCATGGCAAGATCATCCCAATGGAGGTAGAAGAA
GACGAAGAAGAAGGCGACGAGGAGGAGGAGGAGATGGCCAGAGCCGGCAAGTCCATCGAGCAGCAGATCTCCTCGTGGGA
GAGGATCGCAGAGGACATCTCCAACATCCCGAGAATGGTGGAGATGGACTTCTCCCAGTCGATACAACAATGGGGCGAGC
TCAAGCTCGAGGCAGCCATGGAGATCGGCACGAGGATAGAGACCCTAATCTTTGATGAGATCAGGAGAGAAACCGTCTGT
GACATGCTTGCTTCACACTGTACATTGGCAGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis