Browse Element(s) Details


OsAffx.3538.1.S1_at

Description tigr:9631.m04582
TID=OsAffx.3538.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g471604/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47130Os.41695.15.S1_s_at11/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.3.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.4.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.2.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.5.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47140Os.22796.1.S1_at11/113+26628429..26631307expressed protein
LOC_Os03g47149NANA3+26637611..26639162hypothetical protein
LOC_Os03g47160OsAffx.3538.1.S1_at4/113+26640448..26640906hypothetical protein
LOC_Os03g47169Os.51572.1.S1_x_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47169OsAffx.25595.2.S1_x_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47169OsAffx.25595.2.S1_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47178NANA3+26644835..26645222hypothetical protein
LOC_Os03g47190Os.54665.1.S1_at11/113+26655415..26657212expressed protein
LOC_Os03g47200NANA3+26665460..26665930bZIP transcription factor family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3538.1.S1_at--1058--4671Chr03:26640604..26640628 (25 bp)
GCGGTGCCGCACAGTATACGAGTGC
LOC_Os03g47160
OsAffx.3538.1.S1_at--960--2111Chr03:26640614..26640638 (25 bp)
ACAGTATACGAGTGCGTCCGCCGCC
LOC_Os03g47160
OsAffx.3538.1.S1_at--847--8471Chr03:26640725..26640749 (25 bp)
TGGCGTGCACCGAGCGCGGGAACAG
LOC_Os03g47160
OsAffx.3538.1.S1_at--614--9411Chr03:26640809..26640833 (25 bp)
TCGGGCTCGGGCTGTCGTGCAAGGG
LOC_Os03g47160
OsAffx.3538.1.S1_at--331--8611NONE
TGGTGCAGAGCGTGGACAACATCGT
NONE
OsAffx.3538.1.S1_at--536--1631Chr03:26642283..26642302 (20 bp)
AGCGTGGACAACATCGTCTTCGAGA
NONE
OsAffx.3538.1.S1_at--969--2191Chr03:26642285..26642309 (25 bp)
ACAACATCGTCTTCGAGACCCTCGT
NONE
OsAffx.3538.1.S1_at--503--1391Chr03:26642300..26642324 (25 bp)
AGACCCTCGTCCCTAGCAGTTGCGT
NONE
OsAffx.3538.1.S1_at--338--4271Chr03:26642311..26642335 (25 bp)
CCTAGCAGTTGCGTCGTCATTGAGT
NONE
OsAffx.3538.1.S1_at--1064--1231Chr03:26642317..26642341 (25 bp)
AGTTGCGTCGTCATTGAGTTCGTCC
NONE
OsAffx.3538.1.S1_at--375--7131Chr03:26642326..26642350 (25 bp)
GTCATTGAGTTCGTCCCTAGCAGGG
NONE
Target Sequence 
GCGGTGCCGCACAGTATACGAGTGCGTCCGCCGCCGGGGGCGGCGGGTCGGGGCGGCCGGCGAGGCGGCGGCGCCGCTGC
CGCCGTGCGGCCGGAGGAGGACCCGTTCCTCGCGGCGTTCCTGGCGTGCACCGAGCGCGGGAACAGGGGGACGCCCAAGG
GTGGGAGCAAGCTGCTCGGGCTCGGGCTTGGGCTTGGGTCCGGGCTCGGGCTCGGGCTGTCGTGCAAGGGGCCCGGCGGT
GTGGTGCAGAGCGTGGACAACATCGTCTTCGAGACCCTCGTCCCTAGCAGTTGCGTCGTCATTGAGTTCGTCCCTAGCAG
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis