Browse Element(s) Details


Os.53900.1.S1_at

Description gb:AK100696.1
DB_XREF= gi:32985905
TID=Os.53900.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114J05, full insert sequence.
FL= gb:AK100696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0245011/11Sodium/hydrogen exchanger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02400OsAffx.16790.1.S1_s_at11/118+950035..95232240S ribosomal protein S13, putative, expressed
LOC_Os08g02410Os.15168.1.S1_at11/118+956242..95818840S ribosomal protein S13, putative, expressed
LOC_Os08g02420Os.8701.1.S1_at11/118+962973..963903EF hand family protein, expressed
LOC_Os08g02430OsAffx.16791.1.S1_at11/118+964591..965055hypothetical protein
LOC_Os08g02440Os.52478.1.S1_at11/118+967944..972565leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os08g02450Os.53900.1.S1_at11/118+974865..977756Sodium/hydrogen exchanger family protein, expressed
LOC_Os08g02460Os.25130.1.S1_at10/118+977708..981577expressed protein
LOC_Os08g02470NANA8+988034..993870retrotransposon protein, putative, unclassified
LOC_Os08g02480NANA8+995411..997901retrotransposon protein, putative, unclassified
LOC_Os08g02490Os.8367.1.S1_at11/118+1001077..1004672AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53900.1.S1_at--534--3391Chr08:977205..977229 (25 bp)
CAGCGAGAACATGGTCGGTGGCTCC
LOC_Os08g02450
Os.53900.1.S1_at--339--3831Chr08:977317..977341 (25 bp)
CTGACGGCCGGCATATCGGACTGGA
LOC_Os08g02450
Os.53900.1.S1_at--276--10151Chr08:977330..977354 (25 bp)
TATCGGACTGGAGCGAGCACCTGGA
LOC_Os08g02450
Os.53900.1.S1_at--424--9231Chr08:977375..977399 (25 bp)
TCCTGACGTCGACAGACTTCGGATG
LOC_Os08g02450
Os.53900.1.S1_at--1099--2051Chr08:977390..977414 (25 bp)
ACTTCGGATGCAGGGTGTCCACGCT
LOC_Os08g02450
Os.53900.1.S1_at--430--1471Chr08:977448..977472 (25 bp)
AGAATCCTGCCGGTTGCCGGAGTTG
LOC_Os08g02450
Os.53900.1.S1_at--647--5631Chr08:977514..977538 (25 bp)
GACACTCTTTATCTCTAGTTGTAAG
LOC_Os08g02450
Os.53900.1.S1_at--675--7411Chr08:977550..977574 (25 bp)
GTGTTGTACCACTAACATCTTGGCA
LOC_Os08g02450
Os.53900.1.S1_at--316--9011Chr08:977582..977606 (25 bp)
TGCAATCTGTAGCAACCATGCCTTC
LOC_Os08g02450
Os.53900.1.S1_at--34--4451Chr08:977601..977625 (25 bp)
GCCTTCCTAGTCTTTTCTATGAACA
LOC_Os08g02450
Os.53900.1.S1_at--867--5951Chr08:977731..977755 (25 bp)
GAGCAAGTACCATTGCTTAGTCCAG
LOC_Os08g02450
Target Sequence 
CAGCGAGAACATGGTCGGTGGCTCCGACGAGATGGTGGACGTCATCCGGAAGACGAGCCCGGCGTTCAACCTGCTGGTCG
TCGGCCGGCGATCGGAGAGCCCGGAGTCGCCGCTGACGGCCGGCATATCGGACTGGAGCGAGCACCTGGAGCTCGGCGTC
CTCGGCGACCTCCTGACGTCGACAGACTTCGGATGCAGGGTGTCCACGCTGGTGGTGCAGCAGCAGACCATGGCGGCGGC
CGGAGAATCCTGCCGGTTGCCGGAGTTGCCTGCAAAGCACAAATCAGATGAACCTGTCTGACAAATCATGACACTCTTTA
TCTCTAGTTGTAAGCATATTTTACTGTGTTGTACCACTAACATCTTGGCAGCTAGAATGCAATCTGTAGCAACCATGCCT
TCCTAGTCTTTTCTATGAACACGCTAATATGTTTATAATCTCATGATTGGATCAACAGACTAAACAGCTCAGATAGCAAC
AAAAACAGATCTACTAGTAGAGTAGTAAGTCTCCAAAGAGAGTTAAGAGCAAGTACCATTGCTTAGTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis