Browse Element(s) Details


Os.20700.1.S1_at

Description gb:AK071813.1
DB_XREF= gi:32981836
TID=Os.20700.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114B14, full insert sequence.
FL= gb:AK071813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6276011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62740Os.8707.3.S1_x_at11/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62740Os.8707.2.A1_at9/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62750OsAffx.25798.1.S1_at11/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62750Os.8356.1.S1_at1/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62760Os.20700.1.S1_at11/113+35455661..35456964expressed protein
LOC_Os03g62770OsAffx.25799.1.S1_at11/113+35458027..35458911hypothetical protein
LOC_Os03g62780Os.48075.1.S1_at11/113+35459476..35462830S1 RNA binding domain containing protein, expressed
LOC_Os03g62790Os.7536.1.S1_at11/113+35463158..35465296Pirin, putative, expressed
LOC_Os03g62800NANA3+35468607..35471744retrotransposon protein, putative, unclassified
LOC_Os03g62810OsAffx.667.1.S1_at3/113+35472508..35475674transposon protein, putative, Mutator sub-class
LOC_Os03g62820NANA3+35477948..35479080hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20700.1.S1_at--941--5671Chr03:35456178..35456202 (25 bp)
GACATACATTTACAGCCACCTTTGC
LOC_Os03g62760
Os.20700.1.S1_at--27--4531Chr03:35456020..35456044 (25 bp)
GCCGCCTACTATCTTCTTGTAAGAA
LOC_Os03g62760
Os.20700.1.S1_at--903--1471Chr03:35455999..35456023 (25 bp)
AGAATCGACTCCTGTAGCTGTATCC
LOC_Os03g62760
Os.20700.1.S1_at--150--10151Chr03:35455979..35456003 (25 bp)
TATCCTGTCTGTCTGAAGCTCGCAA
LOC_Os03g62760
Os.20700.1.S1_at--108--3791Chr03:35455961..35455985 (25 bp)
CTCGCAACTAGCACGTATGGTCAAT
LOC_Os03g62760
Os.20700.1.S1_at--965--7071Chr03:35455942..35455966 (25 bp)
GTCAATTGCCTATCCTTGGGTGAAC
LOC_Os03g62760
Os.20700.1.S1_at--903--5191Chr03:35455894..35455918 (25 bp)
GAATTGGTGATCCTCCATAGGCACA
LOC_Os03g62760
Os.20700.1.S1_at--322--6851Chr03:35455833..35455857 (25 bp)
GTTTCCATTTACTACACTGCAGATT
LOC_Os03g62760
Os.20700.1.S1_at--616--1971Chr03:35455818..35455842 (25 bp)
ACTGCAGATTTGTCCATTCGTCCAT
LOC_Os03g62760
Os.20700.1.S1_at--321--111Chr03:35455795..35455819 (25 bp)
ATTCTCTACACTGCATCTTGTTCGT
LOC_Os03g62760
Os.20700.1.S1_at--825--9411Chr03:35455765..35455789 (25 bp)
TCGTCCCTCGATTTATGAGCGTCAT
LOC_Os03g62760
Target Sequence 
GACATACATTTACAGCCACCTTTGCATCTGCATCATGGGGGGTCAACAAAATCCTTATTACTTCCTCGAGGACAATCTAC
AAGCTACGCTCTTCTACATCCTGAGTCTCCTAAAGGCAGAAAAAGCACAATGCTAGGGCATTGTTTCAAAAAGATTATGC
CGCCTACTATCTTCTTGTAAGAATCGACTCCTGTAGCTGTATCCTGTCTGTCTGAAGCTCGCAACTAGCACGTATGGTCA
ATTGCCTATCCTTGGGTGAACATGCTGAAGCAGCAGATAGGCATGAATTGGTGATCCTCCATAGGCACATTATAGCAGCA
GATAAGGCTAGACCCACCACCACCAGTTTCCATTTACTACACTGCAGATTTGTCCATTCGTCCATTCTCTACACTGCATC
TTGTTCGTTCTCTTCGTCCCTCGATTTATGAGCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis