Browse Element(s) Details


Os.8707.1.S2_at

Description gb:AK108050.1
DB_XREF= gi:32993259
TID=Os.8707.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-G04, full insert sequence.
FL= gb:AK108050.1 gb:AK070337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6273011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62680Os.49395.1.S1_at7/113+35409217..35412888glycohydrolase family protein, expressed
LOC_Os03g62690Os.50857.1.S2_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62690Os.50857.1.S1_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed
LOC_Os03g62710NANA3+35427237..35428889BED zinc finger family protein
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62740Os.8707.3.S1_x_at11/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62740Os.8707.2.A1_at9/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62750OsAffx.25798.1.S1_at11/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62750Os.8356.1.S1_at1/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62760Os.20700.1.S1_at11/113+35455661..35456964expressed protein
LOC_Os03g62770OsAffx.25799.1.S1_at11/113+35458027..35458911hypothetical protein
LOC_Os03g62780Os.48075.1.S1_at11/113+35459476..35462830S1 RNA binding domain containing protein, expressed
LOC_Os03g62790Os.7536.1.S1_at11/113+35463158..35465296Pirin, putative, expressed
LOC_Os03g62800NANA3+35468607..35471744retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8707.1.S2_at--528--3431Chr03:35442865..35442889 (25 bp)
CAGTTGACGTACTTGGCCGGCTGCG
LOC_Os03g62730
Os.8707.1.S2_at--48--1291Chr03:35442929..35442953 (25 bp)
AGATCTCGAAGTTGTAGGCGCCGCC
LOC_Os03g62730
Os.8707.1.S2_at--1005--5171Chr03:35442966..35442990 (25 bp)
GCAAGTCTTGAAGGGCTCCGTGAAG
LOC_Os03g62730
Os.8707.1.S2_at--877--1631Chr03:35443177..35443201 (25 bp)
AGCGTCATGGTCAGTGGCAGGCAAC
LOC_Os03g62730
Os.8707.1.S2_at--95--2611Chr03:35443197..35443221 (25 bp)
GCAACCGGTTAGAGGTAGCCCCTGT
LOC_Os03g62730
Os.8707.1.S2_at--622--6131Chr03:35443208..35443232 (25 bp)
GAGGTAGCCCCTGTACGATTATGTA
LOC_Os03g62730
Os.8707.1.S2_at--290--4471Chr03:35443255..35443279 (25 bp)
GCCTGCCATGCATCCAATTATTGTT
LOC_Os03g62730
Os.8707.1.S2_at--618--10231Chr03:35443273..35443297 (25 bp)
TATTGTTCTCTCTCTCGAAGGACAG
LOC_Os03g62730
Os.8707.1.S2_at--859--5971Chr03:35443321..35443345 (25 bp)
GAGAAATGTCAAGCGGTCTTCCGGT
LOC_Os03g62730
Os.8707.1.S2_at--6--5771Chr03:35443369..35443393 (25 bp)
GACGATTTGGGTTCGAAGCGCCACC
LOC_Os03g62730
Os.8707.1.S2_at--965--4551Chr03:35443386..35443410 (25 bp)
GCGCCACCTCTCTAATTATTTGATA
LOC_Os03g62730
Target Sequence 
CAGTTGACGTACTTGGCCGGCTGCGCGCAGGCGGTGGTCACCTCCGGCGAGCCGCAGGTGGAGAAGATCTCGAAGTTGTA
GGCGCCGCCGCCGGCGCCGCAGCAAGTCTTGAAGGGCTCCGTGAAGCCGTACCTCGCCGGGGCCGCCATGACGGCGAGGT
GGGCGGCGTAGTAGTCGGCGTAGGCGATGACGGCGGCCGGGTGCTGCCGCCGGAGCCGGCGGAGGCTGGCCTGGAGGCGG
CGGTTGTGGGCGTGGCTCTGCTGGTTGACGGTGGCGGCGCAGCTGATGTTGTCGCGGTCCTCCGGGCGGGCCAGCGTCAT
GGTCAGTGGCAGGCAACCGGTTAGAGGTAGCCCCTGTACGATTATGTACTTGGCCCCCTTCTTCAGCAATGCCTGCCATG
CATCCAATTATTGTTCTCTCTCTCGAAGGACAGAAGGTAGGTAAAACCAATTATACGAGAAATGTCAAGCGGTCTTCCGG
TTAGCTCCACAATTTAGTGGGCTAGACGATTTGGGTTCGAAGCGCCACCTCTCTAATTATTTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8707.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis