Browse Element(s) Details


Os.8356.1.S1_at

Description gb:AU095460
DB_XREF= gi:8858142
DB_XREF=AU095460
CLONE=R2147
TID=Os.8356.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8356 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g627501/11ARTEMIS protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed
LOC_Os03g62710NANA3+35427237..35428889BED zinc finger family protein
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62740Os.8707.3.S1_x_at11/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62740Os.8707.2.A1_at9/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62750OsAffx.25798.1.S1_at11/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62750Os.8356.1.S1_at1/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62760Os.20700.1.S1_at11/113+35455661..35456964expressed protein
LOC_Os03g62770OsAffx.25799.1.S1_at11/113+35458027..35458911hypothetical protein
LOC_Os03g62780Os.48075.1.S1_at11/113+35459476..35462830S1 RNA binding domain containing protein, expressed
LOC_Os03g62790Os.7536.1.S1_at11/113+35463158..35465296Pirin, putative, expressed
LOC_Os03g62800NANA3+35468607..35471744retrotransposon protein, putative, unclassified
LOC_Os03g62810OsAffx.667.1.S1_at3/113+35472508..35475674transposon protein, putative, Mutator sub-class
LOC_Os03g62820NANA3+35477948..35479080hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0010020biological_processchloroplast fission
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009706cellular_componentchloroplast inner membrane
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8356.1.S1_at--445--6791Chr06:6522662..6522686 (25 bp)
GTTATTAGTATAATTGTTCGTGAGG
NONE
Os.8356.1.S1_at--880--4193Chr06:6522718..6522742 (25 bp)
CCCCTCAATGTTATAGTTTCACATG
NONE
Os.8356.1.S1_at--632--10051Chr06:6522731..6522755 (25 bp)
TAGTTTCACATGTGGTGTAATCTGG
NONE
Os.8356.1.S1_at--315--10571Chr06:6522789..6522813 (25 bp)
TTCTTCTTTTTCATTCGGAGATTAG
NONE
Os.8356.1.S1_at--2--7671Chr06:6522814..6522838 (25 bp)
GGGATCCCACGTGTGTTGATCACAT
NONE
Os.8356.1.S1_at--340--1911Chr06:6522822..6522846 (25 bp)
ACGTGTGTTGATCACATGATCCCTT
NONE
Os.8356.1.S1_at--1030--8831Chr06:6522830..6522854 (25 bp)
TGATCACATGATCCCTTCAAAAGTC
NONE
Os.8356.1.S1_at--1123--8831Chr06:6522838..6522862 (25 bp)
TGATCCCTTCAAAAGTCCTGTGTCT
NONE
Os.8356.1.S1_at--315--9311Chr06:6522841..6522865 (25 bp)
TCCCTTCAAAAGTCCTGTGTCTTGT
NONE
Os.8356.1.S1_at--381--2851Chr06:6522850..6522874 (25 bp)
AAGTCCTGTGTCTTGTAATTCTCCA
NONE
Os.8356.1.S1_at--740--7251Chr06:6522852..6522876 (25 bp)
GTCCTGTGTCTTGTAATTCTCCAAC
NONE
Target Sequence 
GTTATTAGTATAATTGTTCGTGAGGNTCAAAATTTGTTATATGTATTGGTAAAAGNCCCCTCAATGTTATAGTTTCACAT
GTGGTGTAATCTGGGTGGTGTTGCAATAAGGTTAGGGGTCCTATGTTTTCTTCTTTTTCATTCGGAGATTAGGGGATCCC
ACGTGTGTTGATCACATGATCCCTTCAAAAGTCCTGTGTCTTGTAATTCTCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis