Browse Element(s) Details


OsAffx.13590.1.S1_at

Description tigr:9631.m06212
TID=OsAffx.13590.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6284011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62780Os.48075.1.S1_at11/113+35459476..35462830S1 RNA binding domain containing protein, expressed
LOC_Os03g62790Os.7536.1.S1_at11/113+35463158..35465296Pirin, putative, expressed
LOC_Os03g62800NANA3+35468607..35471744retrotransposon protein, putative, unclassified
LOC_Os03g62810OsAffx.667.1.S1_at3/113+35472508..35475674transposon protein, putative, Mutator sub-class
LOC_Os03g62820NANA3+35477948..35479080hypothetical protein
LOC_Os03g62830OsAffx.13589.1.S1_at11/113+35482857..35485781hypothetical protein
LOC_Os03g62840OsAffx.13590.1.S1_at11/113+35486614..35487177hypothetical protein
LOC_Os03g62850Os.20160.1.S1_at11/113+35488114..35496981AMP-binding protein, putative, expressed
LOC_Os03g62860Os.29814.1.S1_at11/113+35497637..35500113Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g62870Os.14847.1.S1_at11/113+35501850..35504003RNA polymerase Rpb8 family protein, expressed
LOC_Os03g62880OsAffx.1594.1.S1_at11/113+35510622..35511544hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13590.1.S1_at--585--4151Chr03:35486697..35486844 (25 bp)
CGCCGCCGAGTCCAAATCAAAGCGA
LOC_Os03g62840
OsAffx.13590.1.S1_at--1089--4491Chr03:35486701..35486848 (25 bp)
GCCGAGTCCAAATCAAAGCGAAAGA
LOC_Os03g62840
OsAffx.13590.1.S1_at--910--5771Chr03:35486917..35486941 (25 bp)
GACGAGCCTTGTGCTAACGCCGAGG
LOC_Os03g62840
OsAffx.13590.1.S1_at--602--1691Chr03:35486921..35486945 (25 bp)
AGCCTTGTGCTAACGCCGAGGCAGC
LOC_Os03g62840
OsAffx.13590.1.S1_at--415--4151Chr03:35486973..35486997 (25 bp)
CGCGCAGATGAGCAGCGGCAACCAA
LOC_Os03g62840
OsAffx.13590.1.S1_at--413--4111Chr03:35486975..35486999 (25 bp)
CGCAGATGAGCAGCGGCAACCAACA
LOC_Os03g62840
OsAffx.13590.1.S1_at--509--7811Chr03:35487074..35487098 (25 bp)
GGTCTCCTTGCCTTACGGTGGTCGG
LOC_Os03g62840
OsAffx.13590.1.S1_at--8--3571Chr03:35487080..35487104 (25 bp)
CTTGCCTTACGGTGGTCGGTGAGAT
LOC_Os03g62840
OsAffx.13590.1.S1_at--764--10451Chr03:35487086..35487110 (25 bp)
TTACGGTGGTCGGTGAGATGGTCAA
LOC_Os03g62840
OsAffx.13590.1.S1_at--490--9331Chr03:35487119..35487143 (25 bp)
TCGCGGCGGGCTTGGTTGCCTTCTT
LOC_Os03g62840
OsAffx.13590.1.S1_at--1083--8331Chr03:35487123..35487147 (25 bp)
GGCGGGCTTGGTTGCCTTCTTCTAC
LOC_Os03g62840
Target Sequence 
CGCCGCCGAGTCCAAATCAAAGCGAAAGAAGAACAAGAAGAAGAACGCGGCGGCGGACGACGGCGACGGCGAGGTGGTGG
TGGCCAGCACCGCCGCCGACGAGCCTTGTGCTAACGCCGAGGCAGCGAGGGGATCGGAGCCGGCGGGGAAGGCCGCGCAG
ATGAGCAGCGGCAACCAACAGGCAGCGGCGGCGTCCAACGACGACGTCGACGGTGGTGCTCCGCCGGCGGCGGCGGCGGC
AGGAGGTGGCCGCCGGTCTCCTTGCCTTACGGTGGTCGGTGAGATGGTCAAGGCGGTCGTCGCGGCGGGCTTGGTTGCCT
TCTTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis