Browse Element(s) Details


Os.37320.2.S1_x_at

Description gb:NM_185210.1
DB_XREF= gi:34897505
TID=Os.37320.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0043P23.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0043P23.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6295011/11expressed protein
LOC_Os03g376401/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62900OsAffx.25801.1.S1_at11/113+35522435..35525874hypothetical protein
LOC_Os03g62910Os.23707.1.S1_at11/113+35528696..35535002expressed protein
LOC_Os03g62910Os.23707.2.S1_at4/113+35528696..35535002expressed protein
LOC_Os03g62920OsAffx.25802.1.S1_at11/113+35539574..35540016hypothetical protein
LOC_Os03g62950Os.37320.2.S1_x_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.1.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.2.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62974OsAffx.10400.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.10400.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974Os.32503.1.S1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.29203.3.A1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g63000Os.20602.2.S1_x_at11/113+35561027..35563200hAT family dimerisation domain containing protein
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37320.2.S1_x_at--1098--7931Chr03:35546282..35546306 (25 bp)
GGATACGTTCTGTCTCTTAGGACGA
LOC_Os03g62950
Os.37320.2.S1_x_at--294--611Chr03:35546225..35546249 (25 bp)
ATGCGTGGTCAGGTTATGCCCGAAC
LOC_Os03g62950
Os.37320.2.S1_x_at--436--591Chr03:35546210..35546234 (25 bp)
ATGCCCGAACCTATTGTCGTTTTTG
LOC_Os03g62950
Os.37320.2.S1_x_at--1033--2091Chr03:35546158..35546182 (25 bp)
ACATCCCAGGCTTTGTCATATCAGA
LOC_Os03g62950
Os.37320.2.S1_x_at--607--9732Chr03:35546098..35546122 (25 bp)
TCAATGGTTCTGAGTGCTACTTCCT
LOC_Os03g62950
Os.37320.2.S1_x_at--513--8891Chr03:35546088..35546112 (25 bp)
TGAGTGCTACTTCCTGGGAACGTGC
LOC_Os03g62950
Os.37320.2.S1_x_at--399--2571Chr03:35546070..35546094 (25 bp)
AACGTGCCACTATGCCGAGAAGGGT
LOC_Os03g62950
Os.37320.2.S1_x_at--920--10711Chr03:35546034..35546058 (25 bp)
TTGCAGATTAGTGGGTTCTCCGGTC
LOC_Os03g62950
Os.37320.2.S1_x_at--239--6791Chr03:35545991..35546015 (25 bp)
GTTATGGGACTAATCGCTGGGACTT
LOC_Os03g62950
Os.37320.2.S1_x_at--727--5891Chr03:35545958..35545982 (25 bp)
GAGCTCAATTTGTACCTTGGTGGCT
LOC_Os03g62950
Os.37320.2.S1_x_at--118--631Chr03:35545892..35545916 (25 bp)
ATGCTGAATGCGATGCTGCCGAAGT
LOC_Os03g62950
Target Sequence 
GGATACGTTCTGTCTCTTAGGACGAAAAGGCACACAGACTGCAGACCAATCAAGAAGATGCGTGGTCAGGTTATGCCCGA
ACCTATTGTCGTTTTTGCCCCTTCTTCAGCAACCTCTGCATACCACATCCCAGGCTTTGTCATATCAGAATCAACCGCTG
CACTCGACCTTCGACGCAACCATATCAATGGTTCTGAGTGCTACTTCCTGGGAACGTGCCACTATGCCGAGAAGGGTTTC
AATGGGCATTGCAGATTAGTGGGTTCTCCGGTCTTCAGCCTAAAAGGAAAAGTTATGGGACTAATCGCTGGGACTTGTGT
GAAAGAGCTCAATTTGTACCTTGGTGGCTATGAGATCAAGGTGGCACTGTTAACATCTCATATGGATGGTATGCTGAATG
CGATGCTGCCGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37320.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis