Browse Element(s) Details


OsAffx.29203.3.A1_x_at

Description tigr:9631.m04401
TID=OsAffx.29203.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g629742/11hypothetical protein
LOC_Os02g533402/11cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os12g107701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g241841/11Beta-galactosidase precursor, putative, expressed
LOC_Os04g286301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62910Os.23707.1.S1_at11/113+35528696..35535002expressed protein
LOC_Os03g62910Os.23707.2.S1_at4/113+35528696..35535002expressed protein
LOC_Os03g62920OsAffx.25802.1.S1_at11/113+35539574..35540016hypothetical protein
LOC_Os03g62950Os.37320.2.S1_x_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.1.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.2.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62974OsAffx.10400.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.10400.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974Os.32503.1.S1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.29203.3.A1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g63000Os.20602.2.S1_x_at11/113+35561027..35563200hAT family dimerisation domain containing protein
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63020Os.8119.1.S1_at11/113+35572600..35577646Serine/threonine-protein kinase MHK, putative, expressed
LOC_Os03g63030Os.35344.18.S1_x_at11/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030Os.35344.3.S1_x_at9/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030OsAffx.22940.5.S1_x_at3/113+35579471..35583282transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
GO:0005216molecular_functionion channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29203.3.A1_x_at--436--71153Chr12:7089067..7089089 (23 bp)
GTCATCCAACGGGACGGCGCCAGAG
NONE
OsAffx.29203.3.A1_x_at--344--96152Chr12:7089068..7089089 (22 bp)
TCATCCAACGGGACGGCGCCAGAGA
NONE
OsAffx.29203.3.A1_x_at--387--75562Chr11:17633840..17633864 (25 bp)
GTGGCGCACGCGAACCGACGTGGCA
NONE
OsAffx.29203.3.A1_x_at--25--26198Chr12:5794776..5794800 (25 bp)
AACCGACGTGGCAGGAGGAGGGCGC
LOC_Os12g10770
OsAffx.29203.3.A1_x_at--127--2991Chr03:25608489..25608510 (22 bp)
AATGTCACCTCCATCACTGTCGCTG
NONE
OsAffx.29203.3.A1_x_at--1066--4771Chr03:25608468..25608492 (25 bp)
GCTGCCACCACTCAATGCCGAGGAG
NONE
OsAffx.29203.3.A1_x_at--202--9211Chr03:25608466..25608490 (25 bp)
TGCCACCACTCAATGCCGAGGAGGA
NONE
OsAffx.29203.3.A1_x_at--1063--4351Chr03:25608464..25608488 (25 bp)
CCACCACTCAATGCCGAGGAGGAGG
NONE
OsAffx.29203.3.A1_x_at--542--1051Chr03:25608442..25608466 (25 bp)
AGGTGATTGTCATAGATGTAGAGCC
NONE
OsAffx.29203.3.A1_x_at--694--7411Chr03:25608440..25608464 (25 bp)
GTGATTGTCATAGATGTAGAGCCAA
NONE
OsAffx.29203.3.A1_x_at--1143--8711Chr03:25608435..25608459 (25 bp)
TGTCATAGATGTAGAGCCAATAAGC
NONE
Target Sequence 
GTCATCCAACGGGACGGCGCCAGAGAGGCTGGCGCCGTCCTCCTNCCACNGTGGCGCACGCGAACCGACGTGGCAGGAGG
AGGGCGCCAGCCATGCTGGCGCCGCCGCCTCCATTCCTGTTTCTCTGNNNNNANNNGCAATGTCACCTCCATCACTGTCG
CTGCCACCACTCAATGCCGAGGAGGAGGTGATTGTCATAGATGTAGAGCCAATAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29203.3.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis