Browse Element(s) Details


Os.8119.1.S1_at

Description gb:AK066947.1
DB_XREF= gi:32976965
TID=Os.8119.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.8119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBb0043P23.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089G06, full insert sequence.
FL= gb:AK066947.1 gb:AK098991.1 gb:AK104847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6302011/11Serine/threonine-protein kinase MHK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62974OsAffx.10400.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.10400.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974Os.32503.1.S1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.29203.3.A1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g63000Os.20602.2.S1_x_at11/113+35561027..35563200hAT family dimerisation domain containing protein
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63020Os.8119.1.S1_at11/113+35572600..35577646Serine/threonine-protein kinase MHK, putative, expressed
LOC_Os03g63030Os.35344.18.S1_x_at11/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030Os.35344.3.S1_x_at9/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030OsAffx.22940.5.S1_x_at3/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63040Os.51390.1.S1_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.51390.1.S1_x_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.5292.1.S1_at4/113+35586951..35591762expressed protein
LOC_Os03g63050OsAffx.10401.1.S1_at6/113+35592938..35593615hypothetical protein
LOC_Os03g63060Os.15918.1.S1_x_at11/113+35596426..35597816P21-Rho-binding domain containing protein, expressed
LOC_Os03g63074Os.16644.1.A1_at11/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_x_at9/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_at1/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8119.1.S1_at--1131--8131Chr03:35576832..35576856 (25 bp)
GGAAATTCTGCTGTACCCAGGATTT
LOC_Os03g63020
Os.8119.1.S1_at--768--5511Chr03:35576857..35576879 (23 bp)
GAAAATCCTCCTGTGCAGTCAGGGT
LOC_Os03g63020
Os.8119.1.S1_at--531--3451Chr03:35577027..35577047 (21 bp)
CAGTCAGGGTTTTGGCCTCTCGTTG
LOC_Os03g63020
Os.8119.1.S1_at--804--9391Chr03:35577042..35577066 (25 bp)
TCGTTGCATCAGACCGGCCAATGGG
LOC_Os03g63020
Os.8119.1.S1_at--245--8451Chr03:35577057..35577081 (25 bp)
GGCCAATGGGCGATGTTCCAGCCAT
LOC_Os03g63020
Os.8119.1.S1_at--1133--3531Chr03:35577084..35577108 (25 bp)
CATCCTGGCCACAGGCATATGTGGT
LOC_Os03g63020
Os.8119.1.S1_at--845--4951Chr03:35577098..35577212 (25 bp)
GCATATGTGGTTGACGGCCAAGCCA
LOC_Os03g63020
Os.8119.1.S1_at--245--2651Chr03:35577207..35577231 (25 bp)
AAGCCACACTTCCAGCTGTTGGATT
LOC_Os03g63020
Os.8119.1.S1_at--594--111Chr03:35577229..35577253 (25 bp)
ATTCTCTGGTTCTCCATTCGGTTTG
LOC_Os03g63020
Os.8119.1.S1_at--766--6851Chr03:35577274..35577298 (25 bp)
GTTTGAGAACCGTTCGTTCGCAACA
LOC_Os03g63020
Os.8119.1.S1_at--416--3531Chr03:35577301..35577325 (25 bp)
CATCCGGCAGGTCAATTTCTTCTGA
LOC_Os03g63020
Target Sequence 
GGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAA
TGGGCGATGTTCCAGCCATGTCATCCTGGCCACAGGCATATGTGGTTGACGGCCAAGCCACACTTCCAGCTGTTGGATTC
TCTGGTTCTCCATTCGGTTTGTCCCCCTTACAACCAAATCTGTTTGAGAACCGTTCGTTCGCAACACCCATCCGGCAGGT
CAATTTCTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis