Browse Element(s) Details


Os.5292.1.S1_at

Description gb:NM_185201.1
DB_XREF= gi:34897487
GEN=OSJNBb0043P23.6
TID=Os.5292.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5292 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0043P23.6), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g630404/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63000Os.20602.2.S1_x_at11/113+35561027..35563200hAT family dimerisation domain containing protein
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63020Os.8119.1.S1_at11/113+35572600..35577646Serine/threonine-protein kinase MHK, putative, expressed
LOC_Os03g63030Os.35344.18.S1_x_at11/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030Os.35344.3.S1_x_at9/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030OsAffx.22940.5.S1_x_at3/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63040Os.51390.1.S1_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.51390.1.S1_x_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.5292.1.S1_at4/113+35586951..35591762expressed protein
LOC_Os03g63050OsAffx.10401.1.S1_at6/113+35592938..35593615hypothetical protein
LOC_Os03g63060Os.15918.1.S1_x_at11/113+35596426..35597816P21-Rho-binding domain containing protein, expressed
LOC_Os03g63074Os.16644.1.A1_at11/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_x_at9/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_at1/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63090Os.16908.1.S1_at11/113+35608593..35611728Actin-related protein 2/3 complex subunit 4, putative, expressed
LOC_Os03g63110Os.35410.1.S1_at11/113+35612602..35615784B-cell receptor-associated protein 31-like containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5292.1.S1_at--903--1391Chr03:35591668..35591692 (25 bp)
AGACTGAGGCCGATGGAGCTTCCCA
LOC_Os03g63040
Os.5292.1.S1_at--520--2871Chr03:35591692..35591716 (25 bp)
AAGTGTGGGCTCAGCCTCTGAAGAT
LOC_Os03g63040
Os.5292.1.S1_at--737--8251Chr03:35591723..35591747 (25 bp)
GGCAGATGTCATTGCGTTACCATAC
LOC_Os03g63040
Os.5292.1.S1_at--1120--6771Chr03:35591738..35591762 (25 bp)
GTTACCATACGTCATTCCCTATTAA
LOC_Os03g63040
Os.5292.1.S1_at--701--3011Chr03:35591766..35591790 (25 bp)
AATGCAGCCCAAACTGCTGGGTGCT
NONE
Os.5292.1.S1_at--73--10271Chr03:35591820..35591844 (25 bp)
TTTGAACGCCAAACTGCAACTTGTT
NONE
Os.5292.1.S1_at--243--2071Chr03:35591838..35591862 (25 bp)
ACTTGTTTCTAGGTGCTGCATTTGC
NONE
Os.5292.1.S1_at--393--5231Chr03:35591993..35592017 (25 bp)
GAATATCCTGAGTGAATGCTGCGTG
NONE
Os.5292.1.S1_at--971--111Chr03:35592033..35592057 (25 bp)
ATTCATTGTCAGAACACGCCGATTA
NONE
Os.5292.1.S1_at--115--10791Chr03:35592067..35592091 (25 bp)
TTGATATATCCTGCTGTTACCGCTG
NONE
Os.5292.1.S1_at--1159--6771Chr03:35592082..35592106 (25 bp)
GTTACCGCTGCACAATTTTGATCTG
NONE
Target Sequence 
AGACTGAGGCCGATGGAGCTTCCCAAGTGTGGGCTCAGCCTCTGAAGATTGACCAGGCAGATGTCATTGCGTTACCATAC
GTCATTCCCTATTAATACAATGCAGCCCAAACTGCTGGGTGCTGAGTGAGGATCCTGTGGAGTAACTGAGCATTTGAACG
CCAAACTGCAACTTGTTTCTAGGTGCTGCATTTGCTACAACTAGTGTAGCTCGGCNCNNNNNGNNGATTCATCCATTTGC
GGGTANCACTTCCTATATCCTCATGCACCCTGCTAGATTGGTGCATGAGATTCATCACTTTGTGAGAGTTGGCGTANCAN
CTGAAGAATATCCTGAGTGAATGCTGCGTGGGAANACATTGTCCAATTCATTGTCAGAACACGCCGATTATGTNAGGGGT
TGATATATCCTGCTGTTACCGCTGCACAATTTTGATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis