Browse Element(s) Details


Os.25587.3.S1_x_at

Description gb:NM_185204.1
DB_XREF= gi:34897493
GEN=OSJNBb0043P23.9
TID=Os.25587.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25587 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative oxidase (OSJNBb0043P23.9), mRNA.
PROD=putative oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6301010/11Immutans protein, putative, expressed
LOC_Os04g573206/11Immutans protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62920OsAffx.25802.1.S1_at11/113+35539574..35540016hypothetical protein
LOC_Os03g62950Os.37320.2.S1_x_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.1.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.2.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62974OsAffx.10400.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.10400.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974Os.32503.1.S1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.29203.3.A1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g63000Os.20602.2.S1_x_at11/113+35561027..35563200hAT family dimerisation domain containing protein
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63020Os.8119.1.S1_at11/113+35572600..35577646Serine/threonine-protein kinase MHK, putative, expressed
LOC_Os03g63030Os.35344.18.S1_x_at11/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030Os.35344.3.S1_x_at9/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030OsAffx.22940.5.S1_x_at3/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63040Os.51390.1.S1_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.51390.1.S1_x_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.5292.1.S1_at4/113+35586951..35591762expressed protein
LOC_Os03g63050OsAffx.10401.1.S1_at6/113+35592938..35593615hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009266biological_processresponse to temperature stimulus
GO:0009644biological_processresponse to high light intensity
GO:0009657biological_processplastid organization and biogenesis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0016117biological_processcarotenoid biosynthesis
GO:0009579cellular_componentthylakoid
GO:0009916molecular_functionalternative oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25587.3.S1_x_at--1054--7291Chr03:35565091..35565115 (25 bp)
GTGCGCACCGCAGGAGGATTTTCCG
LOC_Os03g63010
Os.25587.3.S1_x_at--318--3471Chr03:35565185..35565209 (25 bp)
CAGGGAGACGGCTCCTCCTGATGAG
LOC_Os03g63010
Os.25587.3.S1_x_at--1152--7171NONE
GTCTGTGAACATTTTCCTCACGGAG
NONE
Os.25587.3.S1_x_at--421--3752Chr03:35565382..35565401 (20 bp)
CTCACGGAGTCAGTCATCACGATAC
LOC_Os03g63010
Os.25587.3.S1_x_at--291--10772Chr03:35565402..35565426 (25 bp)
TTGATGGATTGTACCGTGACCGCAA
LOC_Os03g63010
Os.25587.3.S1_x_at--1039--7372Chr03:35565417..35565441 (25 bp)
GTGACCGCAACTACGCTAGATTTTT
LOC_Os03g63010
Os.25587.3.S1_x_at--42--1851Chr03:35565429..35565453 (25 bp)
ACGCTAGATTTTTCGTCTTGGAGAC
LOC_Os03g63010
Os.25587.3.S1_x_at--823--5972Chr03:35565449..35565473 (25 bp)
GAGACGATTGCTAGGGTGCCGTATT
LOC_Os03g63010
Os.25587.3.S1_x_at--649--7291Chr03:35565464..35565612 (25 bp)
GTGCCGTATTTTGCGTTTATCTCTA
LOC_Os03g63010
Os.25587.3.S1_x_at--756--2892Chr03:35565663..35565687 (25 bp)
AAGGTGCACTTTGCTGAGAGCTGGA
LOC_Os03g63010
Os.25587.3.S1_x_at--414--8212Chr03:35565685..35565709 (25 bp)
GGAATGAGTTCCATCACCTCTTAAT
LOC_Os03g63010
Target Sequence 
GTGCGCACCGCAGGAGGATTTTCCGCGCGGAGGCGATGAAGACGCAGCAGGAGAAGAAGCAGACCGAGGTGGCCGTCGAG
GAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGATGAGCCGCTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGA
ACAGTCTGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGAT
TTTTCGTCTTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCTATGCTTCACATGTATGAAACATTTGGCTGG
TGGAGGAGAGCTGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25587.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis