Browse Element(s) Details


OsAffx.14457.1.S1_at

Description tigr:9632.m05601
TID=OsAffx.14457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At4g22300
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5739011/11Phospholipase/Carboxylesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein
LOC_Os04g57340NANA4+33914656..33915517AP2 domain containing protein, expressed
LOC_Os04g57350Os.18279.1.S1_at11/114+33919168..33923078EH-domain containing protein 1, putative, expressed
LOC_Os04g57360Os.54317.1.S1_at11/114+33923478..33926185expressed protein
LOC_Os04g57360OsAffx.26645.1.S1_at10/114+33923478..33926185expressed protein
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57390OsAffx.14457.1.S1_at11/114+33934285..33935850Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57400Os.5851.1.S1_at11/114+33936430..339396275-methylthioribose kinase family protein, expressed
LOC_Os04g57410Os.5851.1.S1_at4/114+33942669..339453015-methylthioribose kinase family protein
LOC_Os04g57420Os.48312.1.S1_at11/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_x_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57430Os.15377.1.A1_at7/114+33952558..33954118Leucine Rich Repeat family protein, expressed
LOC_Os04g57440Os.8032.1.S1_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57440Os.8032.1.S2_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57450NANA4+33959729..33963324retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14457.1.S1_at--58--1791Chr04:33935298..33935697 (25 bp)
ACCGCTCCGGTATCTGTAAGGGACG
LOC_Os04g57390
OsAffx.14457.1.S1_at--635--1371Chr04:33935259..33935283 (25 bp)
AGAGCTGTCCAAAGCGTGCACGCGA
LOC_Os04g57390
OsAffx.14457.1.S1_at--621--8651Chr04:33935079..33935103 (25 bp)
TGGGCATAGCAAGCGTGCTGCTTCA
LOC_Os04g57390
OsAffx.14457.1.S1_at--124--151Chr04:33935045..33935069 (25 bp)
ATTAGGCGGATGTGCGGTCTTCAGT
LOC_Os04g57390
OsAffx.14457.1.S1_at--61--3671Chr04:33935009..33935033 (25 bp)
CTTCAATTCCTCTTTTGCTGTCAGA
LOC_Os04g57390
OsAffx.14457.1.S1_at--374--9851Chr04:33934658..33934682 (25 bp)
TACAATGTGGCTTGCAGACACCCGT
LOC_Os04g57390
OsAffx.14457.1.S1_at--589--1411Chr04:33934643..33934667 (25 bp)
AGACACCCGTTTTGTGGATCCATGG
LOC_Os04g57390
OsAffx.14457.1.S1_at--1093--7971Chr04:33934628..33934652 (25 bp)
GGATCCATGGGCAAGCAGGCTCTCT
LOC_Os04g57390
OsAffx.14457.1.S1_at--330--3491Chr04:33934613..33934637 (25 bp)
CAGGCTCTCTAATCCCAATCAAGGA
LOC_Os04g57390
OsAffx.14457.1.S1_at--497--2111Chr04:33934409..33934433 (25 bp)
ACAGGCTTGGGCATTCTTTGGAATA
LOC_Os04g57390
OsAffx.14457.1.S1_at--743--2951Chr04:33934325..33934349 (25 bp)
AAGGCCTGATCCGTAGAGTCTCAAG
LOC_Os04g57390
Target Sequence 
ACCGCTCCGGTATCTGTAAGGGACGAGGAGGATGTACTGAGAGCTGTCCAAAGCGTGCACGCGATGATCGACAGAGAGAT
CGCAGCCGGGACGAATCCACAAGACGTATTCGTTTTTGGACTTAGCCAAGGAGGTGCATTGGGCATAGCAAGCGTGCTGC
TTCACCCGAAAACATTAGGCGGATGTGCGGTCTTCAGTGGCTTCCTTCCCTTCAATTCCTCTTTTGCTGTCAGAGTTACT
GCACAAGCAAAGAAGCTACAATGTGGCTTGCAGACACCCGTTTTGTGGATCCATGGGCAAGCAGGCTCTCTAATCCCAAT
CAAGGAAGGCAGAGATGGAATTAAATTTCTGCGAGGACTTGGCATGAGTTGCGAGTTCAAGGTATACGACAGGCTTGGGC
ATTCTTTGGAATACTACGAATTGGATTACTGTCAGCGGTGGGTTGAGAAAATTTTGCACAGGAGTGGAAGAGAAGGCCTG
ATCCGTAGAGTCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis