Browse Element(s) Details


Os.22723.3.S1_x_at

Description gb:D17786.1
DB_XREF= gi:455499
TID=Os.22723.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22723 (NCBI UniGene Cluster)
UG_TITLE=Elicitor and UV light related transcription factor (Elr) mRNA, complete cds
DEF=Rice mRNA for ubiquitin-conjugating enzyme, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g572205/11Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57170OsAffx.14454.1.S1_at11/114+33845694..33846643hypothetical protein
LOC_Os04g57180Os.49944.1.S1_at10/114+33848590..33851736oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_s_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190Os.24656.1.S1_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_at9/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22723.3.S1_x_at--1071--5131Chr01:30422395..30422419 (25 bp)
GCAACACCATTATTTGTTCCGATTA
NONE
Os.22723.3.S1_x_at--739--8791Chr01:30422409..30422433 (25 bp)
TGTTCCGATTAACCGTGACAATATG
NONE
Os.22723.3.S1_x_at--420--10031NONE
TATGATTCAACCTTTTAAACCACCG
NONE
Os.22723.3.S1_x_at--903--10451NONE
TTAAACCACCGAAGTCATCTTTCCG
NONE
Os.22723.3.S1_x_at--513--5331NONE
GAAGTCATCTTTCCGCACCAAGGTT
NONE
Os.22723.3.S1_x_at--106--10291Chr04:33869622..33869646 (25 bp)
TTTCCACCCGAACATTAATAGCAAT
LOC_Os04g57220
Os.22723.3.S1_x_at--978--10011Chr04:33869604..33869628 (25 bp)
TAGCAATGGCAGCATTTGCCTCGAC
LOC_Os04g57220
Os.22723.3.S1_x_at--495--6111Chr04:33869562..33869586 (25 bp)
GAGTCCTGCACTTACCATATCAAAG
LOC_Os04g57220
Os.22723.3.S1_x_at--322--9711NONE
TCAAAGGTCCTGCTGTCAATTTGTT
NONE
Os.22723.3.S1_x_at--988--3111Chr04:33869445..33869469 (25 bp)
AATTTGTTCACTGCTGACGGACCCG
LOC_Os04g57220
Os.22723.3.S1_x_at--315--6631Chr04:33869406..33869430 (25 bp)
GTTGGTGCCGGAGATTGCTCACATG
LOC_Os04g57220
Target Sequence 
GCAACACCATTATTTGTTCCGATTAACCGTGACAATATGATTCAACCTTTTAAACCACCGAAGTCATCTTTCCGCACCAA
GGTTTTCCACCCGAACATTAATAGCAATGGCAGCATTTGCCTCGACATCCTCAAGGAACAGTGGAGTCCTGCACTTACCA
TATCAAAGGTCCTGCTGTCAATTTGTTCACTGCTGACGGACCCGAACGGCGATGATCCGTTGGTGCCGGAGATTGCTCAC
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22723.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis