Browse Element(s) Details


Os.9650.1.A1_at

Description gb:AK100366.1
DB_XREF= gi:32985575
TID=Os.9650.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.9650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083O16, full insert sequence.
FL= gb:AK100366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5721011/11Actin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57160NANA4+33840976..33843492oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57170OsAffx.14454.1.S1_at11/114+33845694..33846643hypothetical protein
LOC_Os04g57180Os.49944.1.S1_at10/114+33848590..33851736oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_s_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190Os.24656.1.S1_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_at9/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0030029biological_processactin filament-based process
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9650.1.A1_at--274--1411Chr04:33867679..33867703 (25 bp)
AGACAGTAGTTTTATCCGGTGGATC
LOC_Os04g57210
Os.9650.1.A1_at--105--7971Chr04:33867699..33867723 (25 bp)
GGATCTTCATGCTTACCTGGTTTAT
LOC_Os04g57210
Os.9650.1.A1_at--164--1791Chr04:33867926..33867950 (25 bp)
ACCGATTCTGCCTGGTTTGGTGCAA
LOC_Os04g57210
Os.9650.1.A1_at--989--7371Chr04:33868058..33868082 (25 bp)
GTGAGCACTTTCACGGAGGCATGGT
LOC_Os04g57210
Os.9650.1.A1_at--614--1511Chr04:33868095..33868119 (25 bp)
AGCAGTTTCGCCAGAAGACTCGTCG
LOC_Os04g57210
Os.9650.1.A1_at--118--1411Chr04:33868110..33868134 (25 bp)
AGACTCGTCGCAATGGTCCATCTTT
LOC_Os04g57210
Os.9650.1.A1_at--71--8351Chr04:33868215..33868239 (25 bp)
GGCTGTCTGTTAGCTTTTCTCCATA
LOC_Os04g57210
Os.9650.1.A1_at--1059--4871Chr04:33868227..33868251 (25 bp)
GCTTTTCTCCATATCCAGAGTACGG
LOC_Os04g57210
Os.9650.1.A1_at--330--3091Chr04:33868260..33868284 (25 bp)
AATATAGCCTAGTCCCAGGTGTATA
LOC_Os04g57210
Os.9650.1.A1_at--477--951Chr04:33868371..33868395 (25 bp)
AGGAAATGCTCCAACACGATGTACG
LOC_Os04g57210
Os.9650.1.A1_at--351--1911Chr04:33868397..33868421 (25 bp)
ACGTGAATTTTGTTGTCGATTGGCA
LOC_Os04g57210
Target Sequence 
AGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGAGAGACTGGAAAAGGAGCTCCGTGAACTTNTT
CCAGCACATATTTCAGAAGGGATAAGGGTTATTCCTCCCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGAT
TAGCAACGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAGAAGACTCGTCGCAATGGTCCAT
CTTTTGTGAATGTGTGGTAATAGAGCCATATAATTGCAATACGATTGCACGGGAAGAGTCCGTGATGAGGGGAAATAAAC
ATGGGGCTGTCTGTTAGCTTTTCTCCATATCCAGAGTACGGTACATAGCAATATAGCCTAGTCCCAGGTGTATAGAACAA
AAGTGAAGTCCACATTGTGTAGAAATGGACTACAGGTGAATACATAATATACTATTGTTTTTATTATAGGATGTTGTAGA
AGGAAATGCTCCAACACGATGTACGGACGTGAATTTTGTTGTCGATTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9650.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis