Browse Element(s) Details


OsAffx.7595.1.S1_at

Description tigr:9640.m01415
TID=OsAffx.7595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1459011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14570Os.12008.3.S1_at3/1112+8314938..8315285hypothetical protein
LOC_Os12g14580OsAffx.7594.1.S1_at11/1112+8325263..8326965Tetraspanin family protein
LOC_Os12g14590OsAffx.7595.1.S1_at11/1112+8332026..8332583hypothetical protein
LOC_Os12g14600OsAffx.8338.1.S1_x_at2/1112+8335097..8336274retrotransposon protein, putative, unclassified
LOC_Os12g14600OsAffx.22240.1.S1_x_at1/1112+8335097..8336274retrotransposon protein, putative, unclassified
LOC_Os12g14600OsAffx.10020.1.S1_x_at1/1112+8335097..8336274retrotransposon protein, putative, unclassified
LOC_Os12g14610OsAffx.19669.1.S1_at10/1112+8338893..8345239Protein kinase domain containing protein
LOC_Os12g14610OsAffx.18976.1.S1_at1/1112+8338893..8345239Protein kinase domain containing protein
LOC_Os12g14610OsAffx.2159.1.S1_at1/1112+8338893..8345239Protein kinase domain containing protein
LOC_Os12g14610OsAffx.18976.1.S1_x_at1/1112+8338893..8345239Protein kinase domain containing protein
LOC_Os12g14630OsAffx.27632.1.S1_at1/1112+8354519..8359757retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7595.1.S1_at--233--4651Chr12:8332525..8332544 (20 bp)
GCGGTCGGACCGACCCCTGGCTTTG
LOC_Os12g14590
OsAffx.7595.1.S1_at--1128--1771Chr12:8332330..8332536 (25 bp)
ACCGACCCCTGGCTTTGGTGGCGAG
LOC_Os12g14590
OsAffx.7595.1.S1_at--93--4831Chr12:8332234..8332258 (25 bp)
GCTCAAACAGGCACCCGAAACGGAA
LOC_Os12g14590
OsAffx.7595.1.S1_at--1098--2111Chr12:8332228..8332252 (25 bp)
ACAGGCACCCGAAACGGAATCGATT
LOC_Os12g14590
OsAffx.7595.1.S1_at--335--5091Chr12:8332224..8332248 (25 bp)
GCACCCGAAACGGAATCGATTATCT
LOC_Os12g14590
OsAffx.7595.1.S1_at--783--9071Chr12:8332192..8332216 (25 bp)
TGCTTCTACTATTGTCATTCTTACT
LOC_Os12g14590
OsAffx.7595.1.S1_at--291--3731Chr12:8332187..8332211 (25 bp)
CTACTATTGTCATTCTTACTACGAG
LOC_Os12g14590
OsAffx.7595.1.S1_at--580--3691Chr12:8332184..8332208 (25 bp)
CTATTGTCATTCTTACTACGAGATG
LOC_Os12g14590
OsAffx.7595.1.S1_at--1014--7131Chr12:8332179..8332203 (25 bp)
GTCATTCTTACTACGAGATGTGTCA
LOC_Os12g14590
OsAffx.7595.1.S1_at--946--3591Chr12:8332177..8332201 (25 bp)
CATTCTTACTACGAGATGTGTCAAG
LOC_Os12g14590
OsAffx.7595.1.S1_at--14--2031Chr12:8332064..8332194 (25 bp)
ACTACGAGATGTGTCAAGAGAGTAC
LOC_Os12g14590
Target Sequence 
GCGGTCGGACCGACCCCTGGCTTTGGTGGCGAGGAAGGAGAACGTGTGATCGTGGATTCCGGTTGTTCGCAGCACATGAC
CAGTGATAAAAATTGGTTCTCCTCGCTCAAACAGGCACCCGAAACGGAATCGATTATCTTTGGTGATGCTTCTACTATTG
TCATTCTTACTACGAGATGTGTCAAGAGAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis