Browse Element(s) Details


OsAffx.2159.1.S1_at

Description tigr:9629.m03379
TID=OsAffx.2159.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3587011/11hypothetical protein
LOC_Os12g146101/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35820NANA1+20162293..20170128retrotransposon protein, putative, unclassified
LOC_Os01g35830Os.9577.1.S1_at11/111+20172497..20175199expressed protein
LOC_Os01g35830OsAffx.3177.1.S1_at2/111+20172497..20175199expressed protein
LOC_Os01g35840OsAffx.23522.1.S1_x_at11/111+20177334..20178313hypothetical protein
LOC_Os01g35840OsAffx.23522.1.S1_at11/111+20177334..20178313hypothetical protein
LOC_Os01g35850Os.45896.1.S1_x_at11/111+20179283..20181578RAC-like GTP binding protein ARAC7, putative
LOC_Os01g35860OsAffx.27342.1.S1_at4/111+20182060..20185369transposon protein, putative, Mutator sub-class
LOC_Os01g35870OsAffx.2159.1.S1_at11/111+20185813..20186286hypothetical protein
LOC_Os01g35880OsAffx.23523.2.S1_at11/111+20191554..20192825hypothetical protein
LOC_Os01g35890OsAffx.8275.1.S1_at1/111+20195994..20197161retrotransposon protein, putative, unclassified
LOC_Os01g35910NANA1+20201667..20201900hypothetical protein
LOC_Os01g35920NANA1+20202956..20206158hypothetical protein
LOC_Os01g35930Os.38208.1.S1_at11/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_x_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.2.S1_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_at9/111+20211101..20213199hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2159.1.S1_at--884--7753Chr12:8339276..8339300 (25 bp)
GGTGAAGCGGGTGCTTTGCCCCAAC
LOC_Os12g14610
OsAffx.2159.1.S1_at--198--7332Chr05:26936444..26936633 (25 bp)
GTGCTTTGCCCCAACTGCGATTGGG
NONE
OsAffx.2159.1.S1_at--635--811Chr01:20185998..20186022 (25 bp)
ATGGTGGACAGTGCAGTGCATGCAC
LOC_Os01g35870
OsAffx.2159.1.S1_at--685--2051Chr01:20185975..20185999 (25 bp)
ACTTCATGCCCCTGCTTCAATGCAT
LOC_Os01g35870
OsAffx.2159.1.S1_at--145--611Chr01:20185970..20185994 (25 bp)
ATGCCCCTGCTTCAATGCATGCTGT
LOC_Os01g35870
OsAffx.2159.1.S1_at--525--3012Chr05:26936348..26936372 (25 bp)
AATGCATGCTGTTCCCATACAGGCA
NONE
OsAffx.2159.1.S1_at--683--4732Chr05:26936341..26936365 (25 bp)
GCTGTTCCCATACAGGCAGTGGCAC
NONE
OsAffx.2159.1.S1_at--131--1712Chr05:26936318..26936342 (25 bp)
ACCACCTGGTGCTTTTCCTACTACA
NONE
OsAffx.2159.1.S1_at--319--9071Chr01:20185918..20185942 (25 bp)
TGCTTTTCCTACTACACTGACTGGA
LOC_Os01g35870
OsAffx.2159.1.S1_at--990--2011Chr01:20185908..20185932 (25 bp)
ACTACACTGACTGGAGGCAATGCTC
LOC_Os01g35870
OsAffx.2159.1.S1_at--821--6191Chr01:20185895..20185919 (25 bp)
GAGGCAATGCTCAAGTGGACAATAG
LOC_Os01g35870
Target Sequence 
GGTGAAGCGGGTGCTTTGCCCCAACTGCGATTGGGGATGTCAGTATTATCAGTGGGAGGATGAGATGGTGGACAGTGCAG
TGCATGCACTTCATGCCCCTGCTTCAATGCATGCTGTTCCCATACAGGCAGTGGCACCACCTGGTGCTTTTCCTACTACA
CTGACTGGAGGCAATGCTCAAGTGGACAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis