Browse Element(s) Details


Os.9577.1.S1_at

Description gb:AU085792
DB_XREF= gi:7332446
DB_XREF=AU085792
CLONE=C53294
TID=Os.9577.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0047D12.9 (OSJNBa0047D12.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3583011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35780OsAffx.422.1.S1_at1/111+20146733..20147560retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35790NANA1+20150657..20151115hypothetical protein
LOC_Os01g35800OsAffx.29731.1.S1_at1/111+20154238..20156856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35810NANA1+20159258..20159989hypothetical protein
LOC_Os01g35820NANA1+20162293..20170128retrotransposon protein, putative, unclassified
LOC_Os01g35830Os.9577.1.S1_at11/111+20172497..20175199expressed protein
LOC_Os01g35830OsAffx.3177.1.S1_at2/111+20172497..20175199expressed protein
LOC_Os01g35840OsAffx.23522.1.S1_x_at11/111+20177334..20178313hypothetical protein
LOC_Os01g35840OsAffx.23522.1.S1_at11/111+20177334..20178313hypothetical protein
LOC_Os01g35850Os.45896.1.S1_x_at11/111+20179283..20181578RAC-like GTP binding protein ARAC7, putative
LOC_Os01g35860OsAffx.27342.1.S1_at4/111+20182060..20185369transposon protein, putative, Mutator sub-class
LOC_Os01g35870OsAffx.2159.1.S1_at11/111+20185813..20186286hypothetical protein
LOC_Os01g35880OsAffx.23523.2.S1_at11/111+20191554..20192825hypothetical protein
LOC_Os01g35890OsAffx.8275.1.S1_at1/111+20195994..20197161retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9577.1.S1_at--639--4271Chr01:20173210..20173234 (25 bp)
CCTGATTATGAGTTCGGTAGTGCAA
LOC_Os01g35830
Os.9577.1.S1_at--547--6931Chr01:20173194..20173218 (25 bp)
GTAGTGCAAACCAACGAGTCCCATA
LOC_Os01g35830
Os.9577.1.S1_at--127--1151Chr01:20173178..20173202 (25 bp)
AGTCCCATATCAAGCAGCATACGCA
LOC_Os01g35830
Os.9577.1.S1_at--1029--5051Chr01:20173165..20173189 (25 bp)
GCAGCATACGCAAATGATGCACAGA
LOC_Os01g35830
Os.9577.1.S1_at--1042--5111Chr01:20173147..20173171 (25 bp)
GCACAGAGAAATGCCGCAGTTGCTC
LOC_Os01g35830
Os.9577.1.S1_at--910--6051Chr01:20173026..20173050 (25 bp)
GAGTTCTGAGGGAAGAGTTCGACAA
LOC_Os01g35830
Os.9577.1.S1_at--1039--9971Chr01:20172958..20172982 (25 bp)
TACCAGTTTCCTCATCTGGCATAGG
LOC_Os01g35830
Os.9577.1.S1_at--221--6851Chr01:20172957..20172977 (21 bp)
GTTTCCTCATCTGGCATAGGTTTTC
LOC_Os01g35830
Os.9577.1.S1_at--657--3531Chr01:20172730..20172970 (25 bp)
CATCTGGCATAGGTTTTCAAAGAGC
LOC_Os01g35830
Os.9577.1.S1_at--369--10811Chr01:20172634..20172658 (25 bp)
TTGTAGTAGCTTATCATGTCACTGT
LOC_Os01g35830
Os.9577.1.S1_at--526--10171Chr01:20172623..20172647 (25 bp)
TATCATGTCACTGTTTTGTCTCACT
LOC_Os01g35830
Target Sequence 
CCTGATTATGAGTTCGGTAGTGCAAACCAACGAGTCCCATATCAAGCAGCATACGCAAATGATGCACAGAGAAATGCCGC
AGTTGCTCGTGACAAGCGTGCTCAGAGGGCAGTTTGGAATACTAATCTCCGTCTTTTGGAGGTGAAGAAATCCGTCCTGG
AGAAGAAGANGATTGAATTGGAGAGAGTTCTGAGGGAAGAGTTCGACAAAATGATTGAGGAGCAATCTGACCTGGGGGTC
GGATATGCGANCTACCAGTTTCCTCATCTGGCATAGGTTTTCAAAGAGCATGAAACGGAGAATCTTTTGGAAGTGCTGAA
TGCTCGTTAATGGTAGGCTCAGGCTGAATGTATCAGCATATTGTAGTAGCTTATCATGTCACTGTTTTGTCTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis