Browse Element(s) Details


OsAffx.23522.1.S1_x_at

Description tigr:9629.m03376
TID=OsAffx.23522.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3584011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35800OsAffx.29731.1.S1_at1/111+20154238..20156856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35810NANA1+20159258..20159989hypothetical protein
LOC_Os01g35820NANA1+20162293..20170128retrotransposon protein, putative, unclassified
LOC_Os01g35830Os.9577.1.S1_at11/111+20172497..20175199expressed protein
LOC_Os01g35830OsAffx.3177.1.S1_at2/111+20172497..20175199expressed protein
LOC_Os01g35840OsAffx.23522.1.S1_x_at11/111+20177334..20178313hypothetical protein
LOC_Os01g35840OsAffx.23522.1.S1_at11/111+20177334..20178313hypothetical protein
LOC_Os01g35850Os.45896.1.S1_x_at11/111+20179283..20181578RAC-like GTP binding protein ARAC7, putative
LOC_Os01g35860OsAffx.27342.1.S1_at4/111+20182060..20185369transposon protein, putative, Mutator sub-class
LOC_Os01g35870OsAffx.2159.1.S1_at11/111+20185813..20186286hypothetical protein
LOC_Os01g35880OsAffx.23523.2.S1_at11/111+20191554..20192825hypothetical protein
LOC_Os01g35890OsAffx.8275.1.S1_at1/111+20195994..20197161retrotransposon protein, putative, unclassified
LOC_Os01g35910NANA1+20201667..20201900hypothetical protein
LOC_Os01g35920NANA1+20202956..20206158hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23522.1.S1_x_at--956--3211Chr01:20177825..20177849 (25 bp)
CAAGGTGCACGTGGGATCCAACGAA
LOC_Os01g35840
OsAffx.23522.1.S1_x_at--413--7331Chr01:20177829..20177853 (25 bp)
GTGCACGTGGGATCCAACGAAGGTC
LOC_Os01g35840
OsAffx.23522.1.S1_x_at--270--7491Chr01:20177835..20177859 (25 bp)
GTGGGATCCAACGAAGGTCTCATCT
LOC_Os01g35840
OsAffx.23522.1.S1_x_at--534--6351Chr01:20177839..20177863 (25 bp)
GATCCAACGAAGGTCTCATCTGGCA
LOC_Os01g35840
OsAffx.23522.1.S1_x_at--885--3251Chr01:20177843..20177867 (25 bp)
CAACGAAGGTCTCATCTGGCACCAC
LOC_Os01g35840
OsAffx.23522.1.S1_x_at--780--1031Chr01:20177937..20177961 (25 bp)
AGGTCCGAACATCTCACGTTCTCAA
LOC_Os01g35840
OsAffx.23522.1.S1_x_at--225--4472Chr01:20178089..20178113 (25 bp)
GCCTCGCTCGCCTGCAGGAAGAGAA
LOC_Os01g35840
OsAffx.23522.1.S1_x_at--1099--5371Chr01:20178149..20178173 (25 bp)
GAAGAAGAGATGTTCCCTCGACGAG
LOC_Os01g35840
OsAffx.23522.1.S1_x_at--691--6271Chr01:20178157..20178181 (25 bp)
GATGTTCCCTCGACGAGGTTGGTGT
LOC_Os01g35840
OsAffx.23522.1.S1_x_at--263--8771Chr01:20178159..20178183 (25 bp)
TGTTCCCTCGACGAGGTTGGTGTTG
LOC_Os01g35840
OsAffx.23522.1.S1_x_at--372--8911Chr01:20178234..20178258 (25 bp)
TGAGCAAGTGCCCTGATTTCAAAGG
LOC_Os01g35840
Target Sequence 
CAAGGTGCACGTGGGATCCAACGAAGGTCTCATCTGGCACCACACACCGTGGCTCGGCGCCCACGCCGCCAAGGGCCCAG
TGCGCCTGCTCCGCCGCGTGCCCGCGTCCTCCAGGTCCGAACATCTCACGTTCTCAACCTCACCCCCGGGACCGGTGGCG
GCGAGGGCGGGGGAGGAGGGGAGAGGAAGGCGGTGGCTCGGAGGTGGAGTTCGGCGGTGGCGCGAGAGGTCGCCGCCTCG
CCAAGGTCGCCGAGGTCGTCGCCGGCCTCGCTCGCCTGCAGGAAGAGAAGATGGATAGGGGAGAGGAAAGAAGAGAGGGA
GAGAGAAGAAGAGATGTTCCCTCGACGAGGTTGGTGTTGCTGCCGAACTGGCATCCGCCAACGAGAAGCTCAAAAGCATG
TTGACAAAATGAGCAAGTGCCCTGATTTCAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23522.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis