Browse Element(s) Details


OsAffx.23523.2.S1_at

Description gb:NM_193286.1
DB_XREF= gi:34913655
GEN=OSJNBa0047D12.13
TID=OsAffx.23523.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0047D12.13 (OSJNBa0047D12.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3588011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35820NANA1+20162293..20170128retrotransposon protein, putative, unclassified
LOC_Os01g35830Os.9577.1.S1_at11/111+20172497..20175199expressed protein
LOC_Os01g35830OsAffx.3177.1.S1_at2/111+20172497..20175199expressed protein
LOC_Os01g35840OsAffx.23522.1.S1_x_at11/111+20177334..20178313hypothetical protein
LOC_Os01g35840OsAffx.23522.1.S1_at11/111+20177334..20178313hypothetical protein
LOC_Os01g35850Os.45896.1.S1_x_at11/111+20179283..20181578RAC-like GTP binding protein ARAC7, putative
LOC_Os01g35860OsAffx.27342.1.S1_at4/111+20182060..20185369transposon protein, putative, Mutator sub-class
LOC_Os01g35870OsAffx.2159.1.S1_at11/111+20185813..20186286hypothetical protein
LOC_Os01g35880OsAffx.23523.2.S1_at11/111+20191554..20192825hypothetical protein
LOC_Os01g35890OsAffx.8275.1.S1_at1/111+20195994..20197161retrotransposon protein, putative, unclassified
LOC_Os01g35910NANA1+20201667..20201900hypothetical protein
LOC_Os01g35920NANA1+20202956..20206158hypothetical protein
LOC_Os01g35930Os.38208.1.S1_at11/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_x_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.2.S1_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_at9/111+20211101..20213199hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23523.2.S1_at--868--6651Chr01:20192226..20192250 (25 bp)
GTTGAAACGGATCTTATCCCATTGC
LOC_Os01g35880
OsAffx.23523.2.S1_at--254--2251Chr01:20192315..20192339 (25 bp)
AAATTCATGGCCAGCTCGTTGGTTG
LOC_Os01g35880
OsAffx.23523.2.S1_at--664--6231Chr01:20192356..20192380 (25 bp)
GATGGAAGTTGCAGCCTGTGCCTTG
LOC_Os01g35880
OsAffx.23523.2.S1_at--231--3891Chr01:20192371..20192395 (25 bp)
CTGTGCCTTGGCTAGGATCCAAATT
LOC_Os01g35880
OsAffx.23523.2.S1_at--132--8071Chr01:20192462..20192486 (25 bp)
GGAGCCCTTTGATGTTGGAGTTCTA
LOC_Os01g35880
OsAffx.23523.2.S1_at--675--151Chr01:20192568..20192592 (25 bp)
ATTATGGTCCAGCTTCAGCGATGCA
LOC_Os01g35880
OsAffx.23523.2.S1_at--926--8071Chr01:20192636..20192660 (25 bp)
GGAGCTGTGGAATTTGGCAAGTCAT
LOC_Os01g35880
OsAffx.23523.2.S1_at--491--8171Chr01:20192679..20192703 (25 bp)
GGAACTTCTAGCTTGCAGAACTATA
LOC_Os01g35880
OsAffx.23523.2.S1_at--375--751Chr01:20192726..20192750 (25 bp)
ATGTGGGCCTTTGAATCGAGGTGAC
LOC_Os01g35880
OsAffx.23523.2.S1_at--740--9371Chr01:20192741..20192765 (25 bp)
TCGAGGTGACTACAAGGACTTGCTT
LOC_Os01g35880
OsAffx.23523.2.S1_at--233--5691Chr01:20192757..20192781 (25 bp)
GACTTGCTTGACATAATTTTGCTTA
LOC_Os01g35880
Target Sequence 
GTTGAAACGGATCTTATCCCATTGCTGCCCACTGGGTGTTCGATGAAATGTCCCAAAGACAAGAAGCTGCTAATGGGGAA
TGCTAAGAGAAATTCATGGCCAGCTCGTTGGTTGGGTCGAGTGATTAGAGGATGGAAGTTGCAGCCTGTGCCTTGGCTAG
GATCCAAATTATATTGGGAAGGAATACCATTGATGCCCCCATGGTCACCACCGGCTCGAGTAAGCTTCTTGGCATGGGAG
CCCTTTGATGTTGGAGTTCTAGTTATTGGGATAGTGATTTTAAGACATGAGCTGGCTAAGTTGAAACCGTGGCCTCCACC
AAACCAAACCAATATCAGAAATATTATGGTCCAGCTTCAGCGATGCAAGTATCGGAAAATTAGAGTGGAAATGAGTTTAG
ATGCTTGGAAGGAGCTGTGGAATTTGGCAAGTCATGAAAGCTGCACATTCAATGGAACTTCTAGCTTGCAGAACTATATC
AGTTGGCTGAAACAAAATGTATGTGGGCCTTTGAATCGAGGTGACTACAAGGACTTGCTTGACATAATTTTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23523.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis