Browse Element(s) Details


Os.6965.1.S1_at

Description gb:AK099476.1
DB_XREF= gi:32984685
TID=Os.6965.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013024O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013024O19, full insert sequence.
FL= gb:AK058663.1 gb:AK099476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1972011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19680Os.27994.1.A1_at11/113+11047829..11049914enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein
LOC_Os03g19700Os.56274.1.S1_at11/113+11060503..11062018expressed protein
LOC_Os03g19710OsAffx.25147.1.S1_at11/113+11067059..11069406hypothetical protein
LOC_Os03g19710OsAffx.31861.1.S1_at2/113+11067059..11069406hypothetical protein
LOC_Os03g19720Os.6965.1.S1_at11/113+11072407..11073391EF hand family protein, expressed
LOC_Os03g19724Os.51868.1.S1_at11/113+11073421..11074496expressed protein
LOC_Os03g19730Os.51868.2.S1_at10/113+11073665..11074738expressed protein
LOC_Os03g19740OsAffx.25148.1.S1_at11/113+11076256..11076730hypothetical protein
LOC_Os03g19750OsAffx.30515.4.S1_x_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.4.S1_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.1.S1_x_at3/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.2.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_at1/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19760Os.20461.1.S2_s_at11/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.20461.1.S1_at10/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.54720.1.S1_at1/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0019722biological_processcalcium-mediated signaling
GO:0042538biological_processhyperosmotic salinity response
GO:0005829cellular_componentcytosol
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6965.1.S1_at--530--5831Chr03:11072846..11072870 (25 bp)
GACCTCAAGGCGTACCTCGGCTGGG
LOC_Os03g19720
Os.6965.1.S1_at--340--6031Chr03:11072894..11072918 (25 bp)
GAGATCCGCGCCATGATACGCGTGG
LOC_Os03g19720
Os.6965.1.S1_at--1101--2231Chr03:11072989..11073013 (25 bp)
AAATTGGACCGCATCTTCTCAAACT
LOC_Os03g19720
Os.6965.1.S1_at--606--4971Chr03:11072999..11073023 (25 bp)
GCATCTTCTCAAACTCTGCATTGAT
LOC_Os03g19720
Os.6965.1.S1_at--340--51Chr03:11073018..11073042 (25 bp)
ATTGATGCATTGATTGGGAGACTTC
LOC_Os03g19720
Os.6965.1.S1_at--750--6651Chr03:11073078..11073102 (25 bp)
GTTGAGCGATTTTCGAGTTTCGAGA
LOC_Os03g19720
Os.6965.1.S1_at--89--8991Chr03:11073118..11073142 (25 bp)
TAATTGGGCGTAACTGCTCCCGAAA
LOC_Os03g19720
Os.6965.1.S1_at--365--9311Chr03:11073160..11073184 (25 bp)
TCCCCGATGCAGCTTCTTCCATAGA
LOC_Os03g19720
Os.6965.1.S1_at--482--2691Chr03:11073208..11073232 (25 bp)
AAGCTGAGCATCGATGGTGTGAGTT
LOC_Os03g19720
Os.6965.1.S1_at--844--5171Chr03:11073289..11073313 (25 bp)
GCAAGTTTCTTTTTCAATCTGAACC
LOC_Os03g19720
Os.6965.1.S1_at--537--5511Chr03:11073314..11073338 (25 bp)
GAAAATTTGTGTAAGATCCTCGAAA
LOC_Os03g19720
Target Sequence 
GACCTCAAGGCGTACCTCGGCTGGGCCGGGATGCCGGCGGCCGACGAGGAGATCCGCGCCATGATACGCGTGGCCGGCGG
CGGCGACGGCGATGGTTGCGTGGGGCTCGAGGAGCTCGCCATCGTCCTCGGCTGCTCGCCCACAAATTGGACCGCATCTT
CTCAAACTCTGCATTGATGCATTGATTGGGAGACTTCAATTTGTTGGTTGGTGGTGTTGTGGTGATGTGATTGTTGAGCG
ATTTTCGAGTTTCGAGAAGCGTGAGGGATGTTTAATTGGGCGTAACTGCTCCCGAAAATAGGGGTATTAAAAACTCCCCG
ATGCAGCTTCTTCCATAGAAAAAAGTTGAAAAGTTTGTATTGAAGCTGAGCATCGATGGTGTGAGTTGGGGGTAGGTTTT
ATTTGGAACTAATGAGATGTTTCTTTTCTCAATCCTTTTTTAAGCAAGTTTCTTTTTCAATCTGAACCGAAAATTTGTGT
AAGATCCTCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis