Browse Element(s) Details


Os.27994.1.A1_at

Description gb:AK068241.1
DB_XREF= gi:32978259
TID=Os.27994.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147K24, full insert sequence.
FL= gb:AK068241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1968011/11enoyl-CoA hydratase/isomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19640OsAffx.12941.1.S1_at11/113+11024800..11025308hypothetical protein
LOC_Os03g19650Os.26818.2.S1_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.1.S1_a_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.2.S2_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19660OsAffx.12942.2.S1_at11/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_at10/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_x_at8/113+11034988..11036603hypothetical protein
LOC_Os03g19670Os.51091.1.S1_at11/113+11038498..11040989GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g19680Os.27994.1.A1_at11/113+11047829..11049914enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein
LOC_Os03g19700Os.56274.1.S1_at11/113+11060503..11062018expressed protein
LOC_Os03g19710OsAffx.25147.1.S1_at11/113+11067059..11069406hypothetical protein
LOC_Os03g19710OsAffx.31861.1.S1_at2/113+11067059..11069406hypothetical protein
LOC_Os03g19720Os.6965.1.S1_at11/113+11072407..11073391EF hand family protein, expressed
LOC_Os03g19724Os.51868.1.S1_at11/113+11073421..11074496expressed protein
LOC_Os03g19730Os.51868.2.S1_at10/113+11073665..11074738expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006635biological_processfatty acid beta-oxidation
GO:0007275biological_processdevelopment
GO:0008152biological_processmetabolism
GO:0009062biological_processfatty acid catabolism
GO:0009845biological_processseed germination
GO:0009908biological_processflower development
GO:0042371biological_processvitamin K biosynthesis
GO:0005777cellular_componentperoxisome
GO:0003824molecular_functioncatalytic activity
GO:0004300molecular_functionenoyl-CoA hydratase activity
GO:0008935molecular_functionnaphthoate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27994.1.A1_at--439--7691Chr03:11049037..11049061 (25 bp)
GGGTCTTTCACAGAAGCTTTCTCGT
LOC_Os03g19680
Os.27994.1.A1_at--441--5371Chr03:11049049..11049073 (25 bp)
GAAGCTTTCTCGTGTCATTGGACCA
LOC_Os03g19680
Os.27994.1.A1_at--738--2511Chr03:11049097..11049121 (25 bp)
AACTTGCATGCCTATCACAGCTGAA
LOC_Os03g19680
Os.27994.1.A1_at--489--7691Chr03:11049136..11049160 (25 bp)
GGGTCTTGTTAACCACATTGTGGAT
LOC_Os03g19680
Os.27994.1.A1_at--615--291Chr03:11049185..11049209 (25 bp)
ATAGAGGTCTGTGAGGCCATTGCAA
LOC_Os03g19680
Os.27994.1.A1_at--1122--9831Chr03:11049249..11049273 (25 bp)
TAAATGACGGGCTCCAGCTGGACTT
LOC_Os03g19680
Os.27994.1.A1_at--19--8531Chr03:11049267..11049291 (25 bp)
TGGACTTGGAACATGCTCGAGCTCT
LOC_Os03g19680
Os.27994.1.A1_at--486--6711Chr03:11049718..11049742 (25 bp)
GTTCGAAGCCACCATCAAAGCTGTG
LOC_Os03g19680
Os.27994.1.A1_at--77--6511Chr03:11049745..11049769 (25 bp)
GATATATGTTCTGTACCACTGTATG
LOC_Os03g19680
Os.27994.1.A1_at--473--2331Chr03:11049857..11049881 (25 bp)
AAAGTACCATCTTCACATGTGTTAT
LOC_Os03g19680
Os.27994.1.A1_at--110--6791Chr03:11049877..11049901 (25 bp)
GTTATTGGAAGAGTATCGCAGCCTA
LOC_Os03g19680
Target Sequence 
GGGTCTTTCACAGAAGCTTTCTCGTGTCATTGGACCAAATAGAGCACGGGAAGTGTCGTTAACTTGCATGCCTATCACAG
CTGAAATGGCGGAGAAGTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCTGAGTAAGGCAATAGAGGTCTGT
GAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTTGTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGA
ACATGCTCGAGCTCTTGAAAAGGAAAGAGCTCATGACTATTACAATGGTATGACAAAAGAGCAATTCGCAAGTATGCAGA
AATTTATACAGGGCCGGAGTTCGAAGCCACCATCAAAGCTGTGATGATATATGTTCTGTACCACTGTATGTACCGAAATA
TCNATGTACTGTATACATCCACTNGAAGTGTTCAATGACCNTGNAAGAAAAATAAACACTGCCAATGTTGCATACAAAGA
AAGTACCATCTTCACATGTGTTATTGGAAGAGTATCGCAGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27994.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis