Browse Element(s) Details


Os.56274.1.S1_at

Description gb:AK109731.1
DB_XREF= gi:32994940
TID=Os.56274.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56274 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C01, full insert sequence.
FL= gb:AK109731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1970011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19660OsAffx.12942.2.S1_at11/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_at10/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_x_at8/113+11034988..11036603hypothetical protein
LOC_Os03g19670Os.51091.1.S1_at11/113+11038498..11040989GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g19680Os.27994.1.A1_at11/113+11047829..11049914enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein
LOC_Os03g19700Os.56274.1.S1_at11/113+11060503..11062018expressed protein
LOC_Os03g19710OsAffx.25147.1.S1_at11/113+11067059..11069406hypothetical protein
LOC_Os03g19710OsAffx.31861.1.S1_at2/113+11067059..11069406hypothetical protein
LOC_Os03g19720Os.6965.1.S1_at11/113+11072407..11073391EF hand family protein, expressed
LOC_Os03g19724Os.51868.1.S1_at11/113+11073421..11074496expressed protein
LOC_Os03g19730Os.51868.2.S1_at10/113+11073665..11074738expressed protein
LOC_Os03g19740OsAffx.25148.1.S1_at11/113+11076256..11076730hypothetical protein
LOC_Os03g19750OsAffx.30515.4.S1_x_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.4.S1_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.1.S1_x_at3/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.2.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_at1/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19760Os.20461.1.S2_s_at11/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.20461.1.S1_at10/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.54720.1.S1_at1/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56274.1.S1_at--854--3271Chr03:11061025..11061049 (25 bp)
CAAAGGGCGGATGACGTCGATGATC
LOC_Os03g19700
Os.56274.1.S1_at--1144--4631Chr03:11060972..11060996 (25 bp)
GCGTGACGTTCAAGCGGAAGGCCAC
LOC_Os03g19700
Os.56274.1.S1_at--1013--9351Chr03:11060933..11060957 (25 bp)
TCGACATGAGCTTCCGGTACGGCGT
LOC_Os03g19700
Os.56274.1.S1_at--92--9151Chr03:11060724..11060748 (25 bp)
TGCGGGATCCTGCACTGCATGGTCA
LOC_Os03g19700
Os.56274.1.S1_at--154--9891Chr03:11060679..11060703 (25 bp)
TACTTCAGCCACGTGGTGCAGTACA
LOC_Os03g19700
Os.56274.1.S1_at--733--7771Chr03:11060665..11060689 (25 bp)
GGTGCAGTACACGACCATGGACTAC
LOC_Os03g19700
Os.56274.1.S1_at--85--5951Chr03:11060601..11060625 (25 bp)
GAGCACTGCCACTGGAACCGATGAT
LOC_Os03g19700
Os.56274.1.S1_at--104--551Chr03:11060565..11060589 (25 bp)
ATCCCAATGCTGCTTGGCTGGTTGC
LOC_Os03g19700
Os.56274.1.S1_at--51--4731Chr03:11060549..11060573 (25 bp)
GCTGGTTGCTATACGATTGTCTTCA
LOC_Os03g19700
Os.56274.1.S1_at--837--10651Chr03:11060519..11060543 (25 bp)
TTCCTTTTACTGAACGATACCTCGA
LOC_Os03g19700
Os.56274.1.S1_at--1060--6471Chr03:11060504..11060528 (25 bp)
GATACCTCGATCATAATTTGCCTTT
LOC_Os03g19700
Target Sequence 
CAAAGGGCGGATGACGTCGATGATCCCGCCGGCGGCCAAGATGGAGGAGGCCGGCGTGACGTTCAAGCGGAAGGCCACCC
CGCGCGACGTGTTCGACATGAGCTTCCGGTACGGCGTGCTGCACATGCCGGCGTTCGTGGTGGACGAGGGCGCCAAGGTG
CTCCTCGCGAACCTGGTGGCGTTCGAGCAGGGCGGCGGCCGCGCGGCGCGGAAGCTGGAAGGGGGCAACCTGGCGACGGG
GTTCGTGGCGCTGCTGGGTTCGCTGGTGAACTCGCGGCGGGACGTGGAGGTGCTCCGCCGCTGCGGGATCCTGCACTGCA
TGGTCACCGACGAGGAGGCCGTGGCGTACTTCAGCCACGTGGTGCAGTACACGACCATGGACTACGACCGGCACCTGCTG
GCTTGCCTGTTCCGGGACATCCGGGAGCACTGCCACTGGAACCGATGATTTGGGTGTTTCATCCCAATGCTGCTTGGCTG
GTTGCTATACGATTGTCTTCATAGATTTCCTTTTACTGAACGATACCTCGATCATAATTTGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis