Browse Element(s) Details


Os.23125.1.S1_at

Description gb:AK103709.1
DB_XREF= gi:32988918
TID=Os.23125.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136P14, full insert sequence.
FL= gb:AK103709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1978011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19760Os.20461.1.S2_s_at11/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.20461.1.S1_at10/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.54720.1.S1_at1/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19770NANA3+11105565..11106185hypothetical protein
LOC_Os03g19780Os.23125.1.S1_at11/113+11111969..11113058expressed protein
LOC_Os03g19800NANA3+11125162..11126244hypothetical protein
LOC_Os03g19810OsAffx.3278.1.S1_at11/113+11132765..11134146hypothetical protein
LOC_Os03g19820OsAffx.25151.1.S1_at11/113+11135454..11135837hypothetical protein
LOC_Os03g19830OsAffx.12945.1.S1_at11/113+11137208..11137672hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23125.1.S1_at--1161--3231Chr03:11112762..11112786 (25 bp)
CAAGCCTCAAGATTCGTGCATTCGT
LOC_Os03g19780
Os.23125.1.S1_at--1070--10271Chr03:11112816..11112840 (25 bp)
TTTCCTTGGGATTAGTTAGCCTCGA
LOC_Os03g19780
Os.23125.1.S1_at--775--6551Chr03:11112825..11112849 (25 bp)
GATTAGTTAGCCTCGAGCTGTCTGC
LOC_Os03g19780
Os.23125.1.S1_at--686--1611Chr03:11112840..11112864 (25 bp)
AGCTGTCTGCTCTCTAGTTTGTCCT
LOC_Os03g19780
Os.23125.1.S1_at--1101--3751Chr03:11112863..11112887 (25 bp)
CTCTTCTTTTCCATGAGCTGGGTGA
LOC_Os03g19780
Os.23125.1.S1_at--775--71Chr03:11112914..11112938 (25 bp)
ATTGCGGTGATTAACCCGCGCTGTA
LOC_Os03g19780
Os.23125.1.S1_at--356--4131Chr03:11112930..11112954 (25 bp)
CGCGCTGTAATGCAGTAGGCCACAT
LOC_Os03g19780
Os.23125.1.S1_at--84--891Chr03:11112946..11112970 (25 bp)
AGGCCACATTTGTTTTGTTCTCTTC
LOC_Os03g19780
Os.23125.1.S1_at--970--10291Chr03:11112971..11112995 (25 bp)
TTTCTCCTCAGGATTCTTTTGTAGG
LOC_Os03g19780
Os.23125.1.S1_at--497--10091Chr03:11112992..11113016 (25 bp)
TAGGATGCCTCGTTTGTTCTTCTTC
LOC_Os03g19780
Os.23125.1.S1_at--47--10691Chr03:11113014..11113038 (25 bp)
TTCCATCTCTGATAAATGCACCATG
LOC_Os03g19780
Target Sequence 
CAAGCCTCAAGATTCGTGCATTCGTTGTAAATTTGTTTTTTCTTTCTTTCATTTTTTCCTTGGGATTAGTTAGCCTCGAG
CTGTCTGCTCTCTAGTTTGTCCTCTTCTTTTCCATGAGCTGGGTGAGCGGTTATGGCGGTGGTGGTGATGGCATTGCGGT
GATTAACCCGCGCTGTAATGCAGTAGGCCACATTTGTTTTGTTCTCTTCTTTCTCCTCAGGATTCTTTTGTAGGATGCCT
CGTTTGTTCTTCTTCCATCTCTGATAAATGCACCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis