Browse Element(s) Details


Os.46854.1.S1_x_at

Description gb:AK107342.1
DB_XREF= gi:32992551
TID=Os.46854.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative speckle-type protein (OSJNBa0072A12.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-G04, full insert sequence.
FL= gb:AK107342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2905011/11BTB/POZ domain containing protein, expressed
LOC_Os10g290201/11MATH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28990NANA10+14781122..14786814transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29000NANA10+14787559..14787819transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29010NANA10+14789248..14792157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29020Os.24931.1.S1_at11/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.1.S1_x_at1/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.2.S1_x_at1/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29040Os.43567.1.S1_x_at1/1110+14803088..14806229hypothetical protein
LOC_Os10g29050Os.46854.1.S1_x_at11/1110+14809052..14810752BTB/POZ domain containing protein, expressed
LOC_Os10g29050Os.46854.2.S1_x_at8/1110+14809052..14810752BTB/POZ domain containing protein, expressed
LOC_Os10g29060OsAffx.20328.1.S1_x_at11/1110+14812322..14813638hypothetical protein
LOC_Os10g29060OsAffx.20328.1.S1_at11/1110+14812322..14813638hypothetical protein
LOC_Os10g29070OsAffx.30515.1.S1_at11/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.1.S1_x_at11/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.4.S1_x_at6/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.2.S1_x_at3/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.5.S1_x_at2/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.5.S1_at1/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29090NANA10+14821852..14826830retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46854.1.S1_x_at--178--9791Chr10:14810172..14810196 (25 bp)
TAAGCACATTGACACGGACTCCGTG
LOC_Os10g29050
Os.46854.1.S1_x_at--46--5731Chr10:14810188..14810212 (25 bp)
GACTCCGTGGTGAACATTTTGGTAC
LOC_Os10g29050
Os.46854.1.S1_x_at--949--1531Chr10:14810247..14810271 (25 bp)
AGCATGCTTGAAGTTCCTCAGGTCG
LOC_Os10g29050
Os.46854.1.S1_x_at--56--7091Chr10:14810271..14810295 (25 bp)
GTCAAGATCTCTGAAGGCCGTCATG
LOC_Os10g29050
Os.46854.1.S1_x_at--236--6972Chr10:14810324..14810348 (25 bp)
GTAGCTGCCCAGGTCTTATTAAGGA
LOC_Os10g29050
Os.46854.1.S1_x_at--157--2991Chr10:14810352..14810376 (25 bp)
AATGTCCAAGCTTTCTCCTTGTTAA
LOC_Os10g29050
Os.46854.1.S1_x_at--62--9791Chr10:14810444..14810468 (25 bp)
TAAGTTAAACTTAGTGCCCCGCTAT
LOC_Os10g29050
Os.46854.1.S1_x_at--409--6751Chr10:14810556..14810580 (25 bp)
GTTCACTGGAATGTCTGTCGAGCTT
LOC_Os10g29050
Os.46854.1.S1_x_at--104--8171Chr10:14810611..14810635 (25 bp)
GGAAAACCTTATTCAGCTGTTCTGT
LOC_Os10g29050
Os.46854.1.S1_x_at--669--10231Chr10:14810635..14810659 (25 bp)
TTTGTACGTATCTCTTCCATGTGGA
LOC_Os10g29050
Os.46854.1.S1_x_at--595--1251Chr10:14810659..14810683 (25 bp)
AGATTCTGAGCGCTTAGCAGGTTCA
LOC_Os10g29050
Target Sequence 
TAAGCACATTGACACGGACTCCGTGGTGAACATTTTGGTACTAGCTGAGCAGCACAGCTGCCACATGCTTAAGGAAGCAT
GCTTGAAGTTCCTCAGGTCGTCAAGATCTCTGAAGGCCGTCATGGAAACTAATGGGTTTGGGCACTTAATCAGTAGCTGC
CCAGGTCTTATTAAGGATATAATGTCCAAGCTTTCTCCTTGTTAACTTGGGAGAATCAAATCAAGGGCATATATAGGGAT
GAGTCTTCAGTCATGGCAATTGCATTTGTCTATAAGTTAAACTTAGTGCCCCGCTATTATCAAATTTAATAGCACTAGAT
ATATTTAATCTTATACTTCGGTCGATGCAATGTATTAGTACACTTACAAATTATAGGCATTTAAGTTCACTGGAATGTCT
GTCGAGCTTCTTCACTGTTCACAGAATTCCTCTTAGAATGGAAAACCTTATTCAGCTGTTCTGTTTGTACGTATCTCTTC
CATGTGGAGATTCTGAGCGCTTAGCAGGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46854.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis