Browse Element(s) Details


Os.6884.1.S1_at

Description gb:AK070071.1
DB_XREF= gi:32980095
TID=Os.6884.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044B08, full insert sequence.
FL= gb:AK070071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1958011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19530Os.54397.1.S1_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.26950.1.A1_s_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.28943.1.S1_x_at1/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19540Os.53023.1.S1_at10/113+10967883..10969026expressed protein
LOC_Os03g19550OsAffx.3277.1.S1_s_at11/113+10970060..10971339expressed protein
LOC_Os03g19560Os.19474.1.S1_a_at11/113+10971683..10976387TPR Domain containing protein, expressed
LOC_Os03g19570OsAffx.12938.1.S1_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19570Os.7345.1.S1_x_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19580Os.6884.1.S1_at11/113+10986381..10990714expressed protein
LOC_Os03g19590Os.4601.1.S1_a_at11/113+10998964..11007022Phytochrome B, putative, expressed
LOC_Os03g19600Os.11065.1.A1_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19600Os.8570.3.S1_s_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19610Os.18212.1.S1_at11/113+11012355..11014375Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6884.1.S1_at--57--1611Chr03:10986914..10986938 (25 bp)
AGCTGCGACTGGTTGGTTCTTGATA
LOC_Os03g19580
Os.6884.1.S1_at--583--571Chr03:10986882..10986906 (25 bp)
ATCCATGGAAGCTGCACATTACCGC
LOC_Os03g19580
Os.6884.1.S1_at--706--511Chr03:10986847..10986871 (25 bp)
ATCGTTCATGGGATGCTGCAACTGC
LOC_Os03g19580
Os.6884.1.S1_at--482--10291Chr03:10986821..10986845 (25 bp)
TTTGCCTTGCTTCTTTCGGTAGTAG
LOC_Os03g19580
Os.6884.1.S1_at--1145--1491Chr03:10986746..10986770 (25 bp)
AGCGTCCAATTTACACCACTTGAGC
LOC_Os03g19580
Os.6884.1.S1_at--1151--5031Chr03:10986723..10986747 (25 bp)
GCAGATCTAGTTCGTTTGCTGGAGA
LOC_Os03g19580
Os.6884.1.S1_at--387--8111Chr03:10986653..10986677 (25 bp)
GGACGCTATTTCATCTGTTGCTGAT
LOC_Os03g19580
Os.6884.1.S1_at--781--6671Chr03:10986637..10986661 (25 bp)
GTTGCTGATGCACTTTCATGATCCT
LOC_Os03g19580
Os.6884.1.S1_at--896--9931Chr03:10986600..10986624 (25 bp)
TACGTCGAGGGATTGCTGTGTTGCA
LOC_Os03g19580
Os.6884.1.S1_at--522--9971Chr03:10986506..10986530 (25 bp)
TACCTGTACGGTTCATTTTCTGTAA
LOC_Os03g19580
Os.6884.1.S1_at--702--6911Chr03:10986476..10986500 (25 bp)
GTATGTCGGCTACATGCACATCTAG
LOC_Os03g19580
Target Sequence 
AGCTGCGACTGGTTGGTTCTTGATATTCAACCATCCATGGAAGCTGCACATTACCGCCCAGCTCCAAATCGTTCATGGGA
TGCTGCAACTGCCTTTGCCTTGCTTCTTTCGGTAGTAGCAATCTGTATATCCGTTTTTGTGGGNTACGGGGCTTCTAAGA
ACAGGAGCAGCGTCCAATTTACACCACTTGAGCAGATCTAGTTCGTTTGCTGGAGAAAAGAATTTGATGGTCTCGAGTTT
CATTATTTGTGATGCGACAAGGGACGCTATTTCATCTGTTGCTGATGCACTTTCATGATCCTACATAACACTTNTACGTC
GAGGGATTGCTGTGTTGCATCTTTGTAATCTAGTGTAGGACACTGAAAATACATACGATTCAGAATTTCAGACTAGATTT
TGGTTTTATACCTGTACGGTTCATTTTCTGTAAATGATGTATGTCGGCTACATGCACATCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis