Browse Element(s) Details


Os.26950.1.A1_s_at

Description gb:CB639253
DB_XREF= gi:29634244
DB_XREF=OSJNEa08O01.r
CLONE=OSJNEa08O01
TID=Os.26950.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26950 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566099.1 (A.thaliana) putative ATP-dependent RNA helicase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1953011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19480Os.21566.1.S1_at10/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19480Os.52782.1.S1_at1/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19490Os.34204.1.S1_at11/113+10938592..10941213expressed protein
LOC_Os03g19500Os.14794.1.S1_at11/113+10941734..10944621ubiquitinating enzyme, putative, expressed
LOC_Os03g19510Os.8476.1.S1_at11/113+10945631..10948614ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os03g19520Os.5359.1.S1_at11/113+10949596..10958074cyclin, putative, expressed
LOC_Os03g19530Os.54397.1.S1_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.26950.1.A1_s_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.28943.1.S1_x_at1/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19540Os.53023.1.S1_at10/113+10967883..10969026expressed protein
LOC_Os03g19550OsAffx.3277.1.S1_s_at11/113+10970060..10971339expressed protein
LOC_Os03g19560Os.19474.1.S1_a_at11/113+10971683..10976387TPR Domain containing protein, expressed
LOC_Os03g19570OsAffx.12938.1.S1_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19570Os.7345.1.S1_x_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19580Os.6884.1.S1_at11/113+10986381..10990714expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26950.1.A1_s_at--1078--2991Chr03:10966135..10966159 (25 bp)
AATGAACTAATGGATCTGGCAATGA
LOC_Os03g19530
Os.26950.1.A1_s_at--778--1251Chr03:10966363..10966387 (25 bp)
AGATTCAGAGCAAACCGGGATTCAA
LOC_Os03g19530
Os.26950.1.A1_s_at--897--8451Chr03:10966576..10966600 (25 bp)
TGGCCTTGGCATAGGGTACAATGCT
LOC_Os03g19530
Os.26950.1.A1_s_at--1141--3811Chr03:10966689..10966713 (25 bp)
CTGCCTCTTCATCAAATACACCAAG
LOC_Os03g19530
Os.26950.1.A1_s_at--553--2731Chr03:10966711..10966735 (25 bp)
AAGCAACAGCGCACCTTCAAGAGGT
LOC_Os03g19530
Os.26950.1.A1_s_at--30--8911Chr03:10966752..10966776 (25 bp)
TGAGACCGGCACTCCGTGGTTTTGT
LOC_Os03g19530
Os.26950.1.A1_s_at--488--7511Chr03:10966767..10966791 (25 bp)
GTGGTTTTGTTTCTGGTGGCACCAT
LOC_Os03g19530
Os.26950.1.A1_s_at--90--5991Chr03:10966797..10966821 (25 bp)
GAGACGCAAACCAAGCACGGGCAGT
LOC_Os03g19530
Os.26950.1.A1_s_at--1043--4911Chr03:10966847..10966871 (25 bp)
GCTTCCAGACCTGCAGAAAACACTG
LOC_Os03g19530
Os.26950.1.A1_s_at--519--1811Chr03:10967073..10967097 (25 bp)
ACCCAATGTACCAAAATTCTCTCCA
LOC_Os03g19530
Os.26950.1.A1_s_at--186--6731Chr03:10967103..10967127 (25 bp)
GTTCTTCTGCCCTGATGAAACATAT
LOC_Os03g19530
Target Sequence 
AATGAACTAATGGATCTGGCAATGAAGGATGGAAGATTCAGAGCAAACCGGGATTCAAGAAAAGGTGGGAAGAAAAGTGG
CCTTGGCATAGGGTACAATGCTGAATCAGGATCGGTGCCTGCTCCAAGATCTGCTGCATTAAATTCATTGAAGACAGGGA
TGATGCAAAATTTTAAGAGCAGCTTTGTCTCTGCCTCTTCATCAAATACACCAAGCAACAGCGCACCTTCAAGAGGTGCT
CCTTCCTCCTTTGTGAGACCGGCACTCCGTGGTTTTGTTTCTGGTGGCACCATAGGAGGAGACGCAAACCAAGCACGGGC
AGTACTGCCTGCGCCCTCCTTTGTCCCTGCTTCCAGACCTGCAGAAAACACTGTTGAAAATGCGAACCCAAACCCTGAAA
GCTNGAGGGATCGCACGAGGGAGAGAAAGCGGCCGTCGGGGTGGGATCGCTAGGCCTTGGGGGAACCCAATGTACCAAAA
TTCTCTCCATTTTTGTTCTTCTGCCCTGATGAAACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26950.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis