Browse Element(s) Details


Os.8476.1.S1_at

Description gb:AK105977.1
DB_XREF= gi:32991186
TID=Os.8476.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F08, full insert sequence.
FL= gb:AK105977.1 gb:AK099107.1 gb:AK060518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1951011/11ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19452Os.46810.1.S1_at11/113+10917951..10923025expressed protein
LOC_Os03g19452OsAffx.3276.1.S1_at10/113+10917951..10923025expressed protein
LOC_Os03g19452Os.46810.2.S1_x_at1/113+10917951..10923025expressed protein
LOC_Os03g19470OsAffx.12937.1.S1_at11/113+10928353..10930665expressed protein
LOC_Os03g19480Os.21566.1.S1_at10/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19480Os.52782.1.S1_at1/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19490Os.34204.1.S1_at11/113+10938592..10941213expressed protein
LOC_Os03g19500Os.14794.1.S1_at11/113+10941734..10944621ubiquitinating enzyme, putative, expressed
LOC_Os03g19510Os.8476.1.S1_at11/113+10945631..10948614ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os03g19520Os.5359.1.S1_at11/113+10949596..10958074cyclin, putative, expressed
LOC_Os03g19530Os.54397.1.S1_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.26950.1.A1_s_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.28943.1.S1_x_at1/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19540Os.53023.1.S1_at10/113+10967883..10969026expressed protein
LOC_Os03g19550OsAffx.3277.1.S1_s_at11/113+10970060..10971339expressed protein
LOC_Os03g19560Os.19474.1.S1_a_at11/113+10971683..10976387TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8476.1.S1_at--1145--5911Chr03:10946483..10946507 (25 bp)
GAGCTTTTCTGCTTAGTGCTGGGAC
LOC_Os03g19510
Os.8476.1.S1_at--735--1631Chr03:10946358..10946382 (25 bp)
AGCGATACAGCTTACCTAACTCAAG
LOC_Os03g19510
Os.8476.1.S1_at--44--6351Chr03:10946046..10946070 (25 bp)
GATGCTGCATCACAAGGCTAACCTG
LOC_Os03g19510
Os.8476.1.S1_at--513--6491Chr03:10946017..10946041 (25 bp)
GATACCTAGCATACCACACTGGGCA
LOC_Os03g19510
Os.8476.1.S1_at--271--3891Chr03:10945999..10946023 (25 bp)
CTGGGCAGCCCCTAGATAAGATCAA
LOC_Os03g19510
Os.8476.1.S1_at--201--5831Chr03:10945964..10945988 (25 bp)
GACCGTGATTACTTCATGAGCGCGA
LOC_Os03g19510
Os.8476.1.S1_at--38--8051Chr03:10945910..10945934 (25 bp)
GGAGTTATCATGAATCCCCTTAAAG
LOC_Os03g19510
Os.8476.1.S1_at--254--3031Chr03:10945843..10945867 (25 bp)
AATCTCCACGGAGCATTTTTTGGTT
LOC_Os03g19510
Os.8476.1.S1_at--1073--3311Chr03:10945794..10945818 (25 bp)
CACTGTTTTTATTAGCTTGGCAAGA
LOC_Os03g19510
Os.8476.1.S1_at--1063--5151Chr03:10945750..10945774 (25 bp)
GCAACCACATCCTGAGGCTTCAAAG
LOC_Os03g19510
Os.8476.1.S1_at--472--3731Chr03:10945706..10945730 (25 bp)
CTACTAGGAGGATATCTTCTGCGAT
LOC_Os03g19510
Target Sequence 
GAGCTTTTCTGCTTAGTGCTGGGACAAAAGGGAAGCGATACAGCTTACCTAACTCAAGAATAATGATCCATCAACCTCTC
GGAGGAGCCCAAGGACAAGAGACTGATCTTGAGATCCAGGCTAATGAGATGCTGCATCACAAGGCTAACCTGAATGGATA
CCTAGCATACCACACTGGGCAGCCCCTAGATAAGATCAACGTAGATACTGACCGTGATTACTTCATGAGCGCGAAGGAGG
CAAAGGAGTATGGTCTAATTGATGGAGTTATCATGAATCCCCTTAAAGCCCTTCAACCGCTTCCTGCTTCTAGTTAGCCA
TGGAGTGCTCAATCTCCACGGAGCATTTTTTGGTTATCTTTTAGAACTGTTATTGCATCCACTGTTTTTATTAGCTTGGC
AAGATAGTTTTGCGATTCCACAAGCAACCACATCCTGAGGCTTCAAAGTTTGTACAATACAGATGTACTACTAGGAGGAT
ATCTTCTGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis