Browse Element(s) Details


Os.54397.1.S1_at

Description gb:AK103891.1
DB_XREF= gi:32989100
TID=Os.54397.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150D22, full insert sequence.
FL= gb:AK103891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1953011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19480Os.21566.1.S1_at10/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19480Os.52782.1.S1_at1/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19490Os.34204.1.S1_at11/113+10938592..10941213expressed protein
LOC_Os03g19500Os.14794.1.S1_at11/113+10941734..10944621ubiquitinating enzyme, putative, expressed
LOC_Os03g19510Os.8476.1.S1_at11/113+10945631..10948614ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os03g19520Os.5359.1.S1_at11/113+10949596..10958074cyclin, putative, expressed
LOC_Os03g19530Os.54397.1.S1_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.26950.1.A1_s_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.28943.1.S1_x_at1/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19540Os.53023.1.S1_at10/113+10967883..10969026expressed protein
LOC_Os03g19550OsAffx.3277.1.S1_s_at11/113+10970060..10971339expressed protein
LOC_Os03g19560Os.19474.1.S1_a_at11/113+10971683..10976387TPR Domain containing protein, expressed
LOC_Os03g19570OsAffx.12938.1.S1_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19570Os.7345.1.S1_x_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19580Os.6884.1.S1_at11/113+10986381..10990714expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54397.1.S1_at--459--8471Chr03:10966543..10966567 (25 bp)
TGGTCGTGGGCGTGGTGTACGTGGG
LOC_Os03g19530
Os.54397.1.S1_at--72--8631Chr03:10966564..10966588 (25 bp)
TGGGGTTGACTTTGGCCTTGGCATA
LOC_Os03g19530
Os.54397.1.S1_at--513--9031Chr03:10967183..10967207 (25 bp)
TGCACGCTTGTTGTATATCTATGCG
LOC_Os03g19530
Os.54397.1.S1_at--911--5091Chr03:10967184..10967208 (25 bp)
GCACGCTTGTTGTATATCTATGCGA
LOC_Os03g19530
Os.54397.1.S1_at--39--1851Chr03:10967186..10967210 (25 bp)
ACGCTTGTTGTATATCTATGCGACC
LOC_Os03g19530
Os.54397.1.S1_at--606--4931Chr03:10967188..10967212 (25 bp)
GCTTGTTGTATATCTATGCGACCAT
LOC_Os03g19530
Os.54397.1.S1_at--230--3631Chr03:10967189..10967213 (25 bp)
CTTGTTGTATATCTATGCGACCATG
LOC_Os03g19530
Os.54397.1.S1_at--138--10791Chr03:10967190..10967214 (25 bp)
TTGTTGTATATCTATGCGACCATGC
LOC_Os03g19530
Os.54397.1.S1_at--1072--8811Chr03:10967191..10967215 (25 bp)
TGTTGTATATCTATGCGACCATGCC
LOC_Os03g19530
Os.54397.1.S1_at--88--6651Chr03:10967192..10967216 (25 bp)
GTTGTATATCTATGCGACCATGCCC
LOC_Os03g19530
Os.54397.1.S1_at--1057--10791Chr03:10967193..10967217 (25 bp)
TTGTATATCTATGCGACCATGCCCC
LOC_Os03g19530
Target Sequence 
TGGTCGTGGGCGTGGTGTACGTGGGGTTGACTTTGGCCTTGGCATAGGGTACAATGCTGAATCAGGATCGGTNCCTGCTC
CAAGATCTGCTGCANTAAATTCATTGAAGACAGGGATGATGCAAAATTTTAAGAGCAGCTTTGTCTCTGCCTCTTCATCA
AATACACCAAGCAACAGCGCACCTTCAAGAGGTGCTCCTTCCTCCTTTGTGAGACCGGCACTCCGTGGTTTTGTTTCTGG
TGGCACCATAGGAGGAGACGCAAACCAAGCACGGGCAGTACNGCCTGCGCCCTCCTTTGTCCCTGCTTCCAGACCTGCAG
AAAACACTGTTGAAAATGCGAANCCAAACCCTGAAAGCTCGAGGGATCGCACGAGGGAGAGAAAGCGGCCGTCGGGGTGG
GATCGCTAGGCCTTGGGGGAACCCAATGTACCAAAATTCTCTCCATTTTTGTTCTTCTGCCCTGATGAAACATATATTGA
CTGTAACATGTAGATTACATGATGTGAATGATACAATTTCCTGGTGAGCTTGCACGCTTGTTGTATATCTATGCGACCAT
GCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis