Browse Element(s) Details


Os.19474.1.S1_a_at

Description gb:AK066789.1
DB_XREF= gi:32976807
TID=Os.19474.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.19474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013083O07, full insert sequence.
FL= gb:AK066789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1956011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19510Os.8476.1.S1_at11/113+10945631..10948614ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os03g19520Os.5359.1.S1_at11/113+10949596..10958074cyclin, putative, expressed
LOC_Os03g19530Os.54397.1.S1_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.26950.1.A1_s_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.28943.1.S1_x_at1/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19540Os.53023.1.S1_at10/113+10967883..10969026expressed protein
LOC_Os03g19550OsAffx.3277.1.S1_s_at11/113+10970060..10971339expressed protein
LOC_Os03g19560Os.19474.1.S1_a_at11/113+10971683..10976387TPR Domain containing protein, expressed
LOC_Os03g19570OsAffx.12938.1.S1_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19570Os.7345.1.S1_x_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19580Os.6884.1.S1_at11/113+10986381..10990714expressed protein
LOC_Os03g19590Os.4601.1.S1_a_at11/113+10998964..11007022Phytochrome B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0006445biological_processregulation of translation
GO:0009657biological_processplastid organization and biogenesis
GO:0005622cellular_componentintracellular
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19474.1.S1_a_at--384--1471Chr03:10972197..10972221 (25 bp)
AGAAGGATCGGACGCTTCGGACCTT
LOC_Os03g19560
Os.19474.1.S1_a_at--502--8091Chr03:10972179..10972203 (25 bp)
GGACCTTGCTAACGCCGATGACAAG
LOC_Os03g19560
Os.19474.1.S1_a_at--11--5991Chr03:10972136..10972160 (25 bp)
GAGACACCAGAGAGCGATTTCGACG
LOC_Os03g19560
Os.19474.1.S1_a_at--834--7911Chr03:10972106..10972130 (25 bp)
GGATTCATCAGGAGGCGGCTAGCCC
LOC_Os03g19560
Os.19474.1.S1_a_at--194--1831Chr03:10972063..10972087 (25 bp)
ACGCGGTGCTTGAGGGTTCTGATCC
LOC_Os03g19560
Os.19474.1.S1_a_at--246--9551Chr03:10971984..10972008 (25 bp)
TCTTCTCCCTGTTCCGTAAATATTT
LOC_Os03g19560
Os.19474.1.S1_a_at--423--9151Chr03:10971920..10971944 (25 bp)
TGCGAAGCATCGACCACTAACAGTA
LOC_Os03g19560
Os.19474.1.S1_a_at--928--9811Chr03:10971897..10971921 (25 bp)
TAACAGGTACCGTGACTCGCGAGAT
LOC_Os03g19560
Os.19474.1.S1_a_at--135--3831Chr03:10971823..10971847 (25 bp)
CTGCCATTAGCAGCCACATGTTTGT
LOC_Os03g19560
Os.19474.1.S1_a_at--540--9891Chr03:10971798..10971822 (25 bp)
TACTAGAGTTGTTATTGGTCCACCC
LOC_Os03g19560
Os.19474.1.S1_a_at--888--7071Chr03:10971765..10971789 (25 bp)
GTAATTCTATCATTCTTCAGGAGCA
LOC_Os03g19560
Target Sequence 
AGAAGGATCGGACGCTTCGGACCTTGCTAACGCCGATGACAAGGAGAGCGATGACGCTGCAGAGACACCAGAGAGCGATT
TCGACGTGGATGGATTCATCAGGAGGCGGCTAGCCCTGGACCCGGCCGAGCTGGACGCGGTGCTTGAGGGTTCTGATCCC
AGGGGAGTTGTTTCCAGGAGGAGGACGCAGAGGTTGCCCAGGAAGCCCCTTCCTCTTCTCCCTGTTCCGTAAATATTTCC
ACTTCAGTTCAACAATGCACATTTGCCATCTACGCCGTGCGAAGCATCGACCACTAACAGTAACAGGTACCGTGACTCGC
GAGATAGTTGAACATACATATCTGTGTATATCTCTCAGAAGAAGAGCGCGGCGGCTGCCATTAGCAGCCACATGTTTGTT
ACTAGAGTTGTTATTGGTCCACCCNGGTGTATGTAATTCTATCATTCTTCAGGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19474.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis