Browse Element(s) Details


Os.7345.1.S1_x_at

Description gb:AK064183.1
DB_XREF= gi:32974201
TID=Os.7345.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-B09, full insert sequence.
FL= gb:AK064183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1957011/11Fip1 motif family protein, expressed
LOC_Os07g417201/11CCAAT-box transcription factor complex WHAP10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19520Os.5359.1.S1_at11/113+10949596..10958074cyclin, putative, expressed
LOC_Os03g19530Os.54397.1.S1_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.26950.1.A1_s_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.28943.1.S1_x_at1/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19540Os.53023.1.S1_at10/113+10967883..10969026expressed protein
LOC_Os03g19550OsAffx.3277.1.S1_s_at11/113+10970060..10971339expressed protein
LOC_Os03g19560Os.19474.1.S1_a_at11/113+10971683..10976387TPR Domain containing protein, expressed
LOC_Os03g19570OsAffx.12938.1.S1_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19570Os.7345.1.S1_x_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19580Os.6884.1.S1_at11/113+10986381..10990714expressed protein
LOC_Os03g19590Os.4601.1.S1_a_at11/113+10998964..11007022Phytochrome B, putative, expressed
LOC_Os03g19600Os.11065.1.A1_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19600Os.8570.3.S1_s_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7345.1.S1_x_at--277--4791Chr03:10983252..10983276 (25 bp)
GCTCCAGTTCAGATGACAGGTCCAC
LOC_Os03g19570
Os.7345.1.S1_x_at--807--7551Chr03:10983092..10983116 (25 bp)
GGGCCATCCAATAACCATCCAGGTG
LOC_Os03g19570
Os.7345.1.S1_x_at--218--2931Chr03:10983053..10983077 (25 bp)
AAGGAAACTAGCTCTGTGGTGGACA
LOC_Os03g19570
Os.7345.1.S1_x_at--255--6031Chr03:10983003..10983027 (25 bp)
GAGAGGTTCCTCAGAGTGTACCAGG
LOC_Os03g19570
Os.7345.1.S1_x_at--698--7891Chr03:10982970..10982994 (25 bp)
GGTTCTAGGAGATTCTGCCTGTGCA
LOC_Os03g19570
Os.7345.1.S1_x_at--800--8311Chr03:10982943..10982967 (25 bp)
GGCTCAATCTTCTACTCCTGATAAT
LOC_Os03g19570
Os.7345.1.S1_x_at--1114--6451Chr03:10982924..10982948 (25 bp)
GATAATTCTGACATGCTTTCTGAAG
LOC_Os03g19570
Os.7345.1.S1_x_at--869--7131Chr03:10982810..10982834 (25 bp)
GTCTTATCAGATTTTTGCCGTCATG
LOC_Os03g19570
Os.7345.1.S1_x_at--357--3911Chr03:10982677..10982701 (25 bp)
CTGGAGCATGCATTTCTAGTCGATC
LOC_Os03g19570
Os.7345.1.S1_x_at--932--7211Chr03:10982659..10982683 (25 bp)
GTCGATCTCTTAATAACTGCCAAAG
LOC_Os03g19570
Os.7345.1.S1_x_at--370--2872Chr07:24995696..24995842 (25 bp)
AAGTGATCACCATCTCCATGAATCT
LOC_Os07g41720
Target Sequence 
GCTCCAGTTCAGATGACAGGTCCACAGTAAATGACAAATGCATCACTACCAAAAGATGTGGGCCATCCAATAACCATCCA
GGTGTTGATGAATATCTGAAGGAAACTAGCTCTGTGGTGGACAGAGTGGTTGATAAAGAAGTGCACAAGAGAGGTTCCTC
AGAGTGTACCAGGAGCAAAACGGTTCTAGGAGATTCTGCCTGTGCAGGGGCTCAATCTTCTACTCCTGATAATTCTGACA
TGCTTTCTGAAGAATCAACAGAAGATTTTCATTTTAAGAGGAAGCGTGGAAAATCAAATTCCAATGCTTTTTATGTGGAA
ACCAACCGTAAGGATGAGCATGTCTTATCAGATTTTTGCCGTCATGCAAGTAAATCAGACCAAGAAAGTAGCAAGGGTGA
GAGCCATAGATATACCCCCTCTCCTGCTGATGACAGATATCACAAGGCAACTAAACGTCAGAGGATGGATGAAGCTGGAG
CATGCATTTCTAGTCGATCTCTTAATAACTGCCAAAGTGATCACCATCTCCATGAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7345.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis