Browse Element(s) Details


OsAffx.12937.1.S1_at

Description tigr:9631.m01924
TID=OsAffx.12937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1947011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed
LOC_Os03g19436Os.1478.1.S1_at11/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436OsAffx.25145.1.S1_at7/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436Os.30136.1.S1_at4/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19452Os.46810.1.S1_at11/113+10917951..10923025expressed protein
LOC_Os03g19452OsAffx.3276.1.S1_at10/113+10917951..10923025expressed protein
LOC_Os03g19452Os.46810.2.S1_x_at1/113+10917951..10923025expressed protein
LOC_Os03g19470OsAffx.12937.1.S1_at11/113+10928353..10930665expressed protein
LOC_Os03g19480Os.21566.1.S1_at10/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19480Os.52782.1.S1_at1/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19490Os.34204.1.S1_at11/113+10938592..10941213expressed protein
LOC_Os03g19500Os.14794.1.S1_at11/113+10941734..10944621ubiquitinating enzyme, putative, expressed
LOC_Os03g19510Os.8476.1.S1_at11/113+10945631..10948614ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os03g19520Os.5359.1.S1_at11/113+10949596..10958074cyclin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12937.1.S1_at--1072--6631Chr03:10929843..10929867 (25 bp)
GTTGATCGCACCTCGTCAAAATGGA
LOC_Os03g19470
OsAffx.12937.1.S1_at--766--2471Chr03:10929891..10929915 (25 bp)
AACACTGCTCATTGGTGGTCGCATC
LOC_Os03g19470
OsAffx.12937.1.S1_at--342--1051Chr03:10930111..10930135 (25 bp)
AGGTGATCATGTATATCCCCATCTC
LOC_Os03g19470
OsAffx.12937.1.S1_at--634--6271Chr03:10930136..10930160 (25 bp)
GATGCTTCCACAGCTTACCTTAAAG
LOC_Os03g19470
OsAffx.12937.1.S1_at--818--7591Chr03:10930173..10930197 (25 bp)
GGGCATCATGGGTCGACCATTACAT
LOC_Os03g19470
OsAffx.12937.1.S1_at--396--9191Chr03:10930379..10930403 (25 bp)
TGCCTCTCAGTGACACTCGTGTAAG
LOC_Os03g19470
OsAffx.12937.1.S1_at--383--891Chr03:10930402..10930426 (25 bp)
AGGCCGGTGCCTGAGATAAACATGA
LOC_Os03g19470
OsAffx.12937.1.S1_at--481--151Chr03:10930477..10930501 (25 bp)
ATTACCAATCTATCTGGGCTCAGGA
LOC_Os03g19470
OsAffx.12937.1.S1_at--1119--6251Chr03:10930504..10930528 (25 bp)
GATGGGCATCCATCTGTGTATGGGA
LOC_Os03g19470
OsAffx.12937.1.S1_at--144--10091Chr03:10930541..10930565 (25 bp)
TAGGTTTGACAGCATCGAGCGTTCA
LOC_Os03g19470
OsAffx.12937.1.S1_at--717--5271Chr03:10930608..10930632 (25 bp)
GAATGAGCTGCTGTTCTACCATCTG
LOC_Os03g19470
Target Sequence 
GTTGATCGCACCTCGTCAAAATGGAGAGGTGCTGATGTTCTTGTGTTCAACACTGCTCATTGGTGGTCGCATCACAAAAC
AAAAGCTGGAGTGAACTACTATCAAGAAGGTGATCATGTATATCCCCATCTCGATGCTTCCACAGCTTACCTTAAAGCAC
TAACCACATGGGCATCATGGGTCGACCATTACATCAATCCAAGGAAAACTCGAGTGTTCTTCCGAAGCTCATCCCCGTCG
CATTTCAGCGGCGGGGAGTGGAATTCAGGGGGACACTGCAGAGAGAGCACACTGCCTCTCAGTGACACTCGTGTAAGGCC
GGTGCCTGAGATAAACATGATCTTGGAGCAAGTAGCACAGCAAATGAAGACTTCTGTGACAATTCTGAACATTACCAATC
TATCTGGGCTCAGGATAGATGGGCATCCATCTGTGTATGGGAGGAAGGCAGTGGTAGGTTTGACAGCATCGAGCGTTCAG
GATTGCAGCCACTGGTGCCTTCCTGGAGTGCCAGATACATGGAATGAGCTGCTGTTCTACCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis