Browse Element(s) Details


Os.11159.1.S1_at

Description gb:AK121001.1
DB_XREF= gi:37990624
TID=Os.11159.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nuclear RNA binding protein A (P0690B02.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044L15, full insert sequence.
FL= gb:AK059581.1 gb:AK121001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5239011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g194101/11prolyl oligopeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52330NANA1+30402471..30403973NB-ARC domain containing protein, expressed
LOC_Os01g52340Os.18053.1.S1_at11/111+30406496..30408328NB-ARC domain containing protein, expressed
LOC_Os01g52350OsAffx.2311.1.S1_at11/111+30409693..30410557hypothetical protein
LOC_Os01g52360OsAffx.23763.1.S1_at11/111+30410839..30412329NB-ARC domain containing protein
LOC_Os01g52370Os.22675.1.S1_at3/111+30415035..30415785expressed protein
LOC_Os01g52380Os.23709.1.S1_at10/111+30418212..30420020expressed protein
LOC_Os01g52380Os.35895.2.S1_x_at1/111+30418212..30420020expressed protein
LOC_Os01g52390Os.11159.1.S1_at11/111+30422267..30425641retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52400Os.52362.1.S1_at11/111+30429832..30434188acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase containing protein, expressed
LOC_Os01g52410OsAffx.2312.1.S1_at11/111+30444067..30445393Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g52420OsAffx.2313.1.S1_at11/111+30446858..30447088hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11159.1.S1_at--1143--8611Chr01:30422569..30422593 (25 bp)
TGGTGGTTACCAACGTGGCCCATAT
LOC_Os01g52390
Os.11159.1.S1_at--172--10751Chr01:30422525..30422549 (25 bp)
TTGAAGATCAGGCTCAGTTCCCAAC
LOC_Os01g52390
Os.11159.1.S1_at--295--5411Chr01:30422491..30422515 (25 bp)
GAAGCCGCGTGCGTGAACGGTCTAA
LOC_Os01g52390
Os.11159.1.S1_at--947--5451Chr01:30422477..30422501 (25 bp)
GAACGGTCTAAGAGCATCGCAGCAT
LOC_Os01g52390
Os.11159.1.S1_at--983--4931Chr01:30422456..30422480 (25 bp)
GCATTGTTTTTACTGGTGTCACCTT
LOC_Os01g52390
Os.11159.1.S1_at--1140--7432Chr03:10902809..10902831 (22 bp)
GTGTCACCTTTAAATTTTGCCCGCA
LOC_Os03g19410
Os.11159.1.S1_at--881--10391Chr01:30422427..30422451 (25 bp)
TTTTGCCCGCAGTTGAATCATATTG
LOC_Os01g52390
Os.11159.1.S1_at--75--8711Chr01:30422369..30422393 (25 bp)
TGTGCCTTTTTTCCATCGTGTGTTG
LOC_Os01g52390
Os.11159.1.S1_at--883--9411Chr01:30422354..30422378 (25 bp)
TCGTGTGTTGGTCTACTTTGTATAC
LOC_Os01g52390
Os.11159.1.S1_at--358--6891Chr01:30422335..30422359 (25 bp)
GTATACCGGAGTTGCTTGTCAGAAT
LOC_Os01g52390
Os.11159.1.S1_at--920--8752Chr01:30422297..30422321 (25 bp)
TGTAGGCTAGCTTTTACCATTTTGT
LOC_Os01g52390
Target Sequence 
TGGTGGTTACCAACGTGGCCCATATTCTACATCTGCACCATCCATTGAAGATCAGGCTCAGTTCCCAACCCTTGGTGGGA
AGCCGCGTGCGTGAACGGTCTAAGAGCATCGCAGCATTGTTTTTACTGGTGTCACCTTTAAATTTTGCCCGCAGTTGAAT
CATATTGTCACGGTTAATCGGAACAAATAATGGTGTTGCCTGTGCCTTTTTTCCATCGTGTGTTGGTCTACTTTGTATAC
CGGAGTTGCTTGTCAGAATTAGCCTCTAATTTTGTAGGCTAGCTTTTACCATTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis