Browse Element(s) Details


Os.52362.1.S1_at

Description gb:AK066657.1
DB_XREF= gi:32976675
TID=Os.52362.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069K22, full insert sequence.
FL= gb:AK066657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5240011/11acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52340Os.18053.1.S1_at11/111+30406496..30408328NB-ARC domain containing protein, expressed
LOC_Os01g52350OsAffx.2311.1.S1_at11/111+30409693..30410557hypothetical protein
LOC_Os01g52360OsAffx.23763.1.S1_at11/111+30410839..30412329NB-ARC domain containing protein
LOC_Os01g52370Os.22675.1.S1_at3/111+30415035..30415785expressed protein
LOC_Os01g52380Os.23709.1.S1_at10/111+30418212..30420020expressed protein
LOC_Os01g52380Os.35895.2.S1_x_at1/111+30418212..30420020expressed protein
LOC_Os01g52390Os.11159.1.S1_at11/111+30422267..30425641retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52400Os.52362.1.S1_at11/111+30429832..30434188acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase containing protein, expressed
LOC_Os01g52410OsAffx.2312.1.S1_at11/111+30444067..30445393Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g52420OsAffx.2313.1.S1_at11/111+30446858..30447088hypothetical protein
LOC_Os01g52430Os.40626.2.S1_x_at6/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430Os.40626.1.S1_at5/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430OsAffx.23764.1.S1_at1/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52440OsAffx.23764.1.S1_at11/111+30457211..30457732hypothetical protein
LOC_Os01g52450Os.41826.1.S1_x_at10/111+30458236..30462095Hexokinase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52362.1.S1_at--734--8211Chr01:30433213..30433237 (25 bp)
GGAATCTATTCGCATGTCCTTTGGC
LOC_Os01g52400
Os.52362.1.S1_at--779--8511Chr01:30433309..30433333 (25 bp)
TGGCAATTTCCGAGACATCACTTAG
LOC_Os01g52400
Os.52362.1.S1_at--192--531Chr01:30433755..30433779 (25 bp)
ATCGCTCATTCTTTGGACTGGGCAT
LOC_Os01g52400
Os.52362.1.S1_at--751--2331Chr01:30433799..30433823 (25 bp)
AAAGAAGTCGCCCATTCTTTGACTG
LOC_Os01g52400
Os.52362.1.S1_at--947--6711Chr01:30434007..30434031 (25 bp)
GTTCGTGGATGCACAAATGCTCCTT
LOC_Os01g52400
Os.52362.1.S1_at--257--2291Chr01:30434021..30434045 (25 bp)
AAATGCTCCTTAGTCGTTGTACATA
LOC_Os01g52400
Os.52362.1.S1_at--1149--211Chr01:30434043..30434067 (25 bp)
ATATATTTGGCGTTGCCTCGGTTTT
LOC_Os01g52400
Os.52362.1.S1_at--411--7031Chr01:30434077..30434101 (25 bp)
GTACAGTGTATGTATGTCGCCTCCT
LOC_Os01g52400
Os.52362.1.S1_at--182--3911Chr01:30434100..30434124 (25 bp)
CTGGATCTCAGGCTCGAATTTGTAT
LOC_Os01g52400
Os.52362.1.S1_at--301--1971Chr01:30434140..30434164 (25 bp)
ACTGCTAGTGCTGAGATGGTCCAAA
LOC_Os01g52400
Os.52362.1.S1_at--1023--3111Chr01:30434164..30434188 (25 bp)
AATTTGCATTGGTGTTCTTCGGACG
LOC_Os01g52400
Target Sequence 
GGAATCTATTCGCATGTCCTTTGGCCAAGGACGTCGTGGAATTTGCAAATTTAGAAGTTGGAACCGCTGAAATTTCTATA
AACTTTCAAGTTTTACTGGCAATTTCCGAGACATCACTTAGGAAGCATCGCTCATTCTTTGGACTGGGCATGNTTCACAT
CGTGTTCTTGAAAGAAGTCGCCCATTCTTTGACTGNTAAAGCAAGAGTTTCTCGNTGATATTCTAATACCTGAACACAGG
AATACATCATACAGATGNTGAATGNCCCCTTCACTNCAGATTTGACCAAATACTGNCGCATCTGGATATAGGACACTTGG
NAAGNTGCGNGNCGNTTCNTTTTTCTTTTTTATTTTCTCTTGAGATGAGATGAGTAGTGGTGTTCGTGGATGCACAAATG
CTCCTTAGTCGTTGTACATATATTTGGCGTTGCCTCGGTTTTGTTCATCCTGTACAGTGTATGTATGTCGCCTCCTGGAT
CTCAGGCTCGAATTTGTATTGTCTGAACGATGTTACTGCTAGTGCTGAGATGGTCCAAAATTTGCATTGGTGTTCTTCGG
ACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis